Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k16r
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 37 0.007
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 33 0.11
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 33 0.11
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 32 0.14
Z92849-5|CAB07430.1| 163|Caenorhabditis elegans Hypothetical pr... 32 0.19
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 30 0.58
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 30 0.58
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 30 0.58
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 30 0.76
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 30 0.76
AF036693-4|AAK29786.1| 360|Caenorhabditis elegans Hypothetical ... 29 1.0
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 1.3
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 1.3
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 1.3
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 1.3
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 1.3
Z93381-1|CAB07604.1| 509|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF039712-1|AAK21402.2| 239|Caenorhabditis elegans 2 (zwei) ig-d... 29 1.8
Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical pr... 28 2.3
AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical ... 28 2.3
AC025727-4|AAG23388.3| 463|Caenorhabditis elegans Hypothetical ... 28 2.3
Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 28 3.1
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 4.1
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 27 4.1
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 27 4.1
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 27 5.4
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 27 5.4
Z81077-15|CAN99680.1| 664|Caenorhabditis elegans Hypothetical p... 27 7.1
Z81077-14|CAN99679.1| 662|Caenorhabditis elegans Hypothetical p... 27 7.1
Z81077-2|CAD56583.2| 656|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81077-1|CAB03066.2| 658|Caenorhabditis elegans Hypothetical pr... 27 7.1
U41017-3|AAC48213.1| 548|Caenorhabditis elegans Hypothetical pr... 27 7.1
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 26 9.4
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 26 9.4
AC006607-3|AAK68172.1| 408|Caenorhabditis elegans Prion-like-(q... 26 9.4
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 36.7 bits (81), Expect = 0.007
Identities = 29/94 (30%), Positives = 46/94 (48%)
Frame = +3
Query: 78 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFG 257
GSV G G +SG+ + N+ G ++G + +G +G N G+G NN G G
Sbjct: 197 GSV-GSGSGNSGNSSNNN-NSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNG 254
Query: 258 NVLNINGISGNLGRTVHVDDDLDEGSAISAGDSH 359
N N NG +GN G + + + G+ + G+ H
Sbjct: 255 NG-NSNGNNGN-GSNGNGNGNNGNGNNGNNGNGH 286
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.11
Identities = 28/109 (25%), Positives = 42/109 (38%)
Frame = +3
Query: 75 AGSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLF 254
+G+ G G ++G +NN G G + G G N +GSG G
Sbjct: 32 SGNTGGFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-S 90
Query: 255 GNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGL 401
GN SGN G T + G+ +G++ F +G + GL
Sbjct: 91 GNAGGTGFGSGNAGGTGFGSGNAG-GTGFGSGNAGGTGFGSGNAGGTGL 138
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.11
Identities = 28/109 (25%), Positives = 42/109 (38%)
Frame = +3
Query: 75 AGSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLF 254
+G+ G G ++G +NN G G + G G N +GSG G
Sbjct: 32 SGNTGGFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-S 90
Query: 255 GNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGL 401
GN SGN G T + G+ +G++ F +G + GL
Sbjct: 91 GNAGGTGFGSGNAGGTGFGSGNAG-GTGFGSGNAGGTGFGSGNAGGTGL 138
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.14
Identities = 28/109 (25%), Positives = 41/109 (37%)
Frame = +3
Query: 75 AGSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLF 254
+G+ G G ++G +NN G G + G G N +GSG G
Sbjct: 32 SGNTGGFGSGNAGGTGFGSSNNGGSGFGGNNNVGPRFGNGNAGGTGFGSGNAGGTGFG-S 90
Query: 255 GNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGL 401
GN SGN G T + G+ G++ F +G + GL
Sbjct: 91 GNAGGTGFGSGNAGGTGFGSGNAG-GTGFGGGNAGGTGFGSGNAGGTGL 138
>Z92849-5|CAB07430.1| 163|Caenorhabditis elegans Hypothetical
protein H12D21.6 protein.
Length = 163
Score = 31.9 bits (69), Expect = 0.19
Identities = 24/93 (25%), Positives = 38/93 (40%)
Frame = +3
Query: 99 KSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNING 278
+S G + + + G G + GF N + + G G NN Q FG + +G
Sbjct: 63 QSGFGGQSQQSSGFGGSSSNGMGSSNSQGGFGNQESQSSGMGSNNQ-RQSGFGGQMGSSG 121
Query: 279 ISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNN 377
SG+ G + GS+ +G S G N+
Sbjct: 122 SSGSSGSSSQSGFGGQMGSSGQSGSSSNGMGNS 154
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 30.3 bits (65), Expect = 0.58
Identities = 28/106 (26%), Positives = 44/106 (41%)
Frame = +3
Query: 78 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFG 257
G+ +G G DD GT+ G + G + G+ G + D + G+G+ N R G
Sbjct: 446 GNPKGEWDDGDGDEDDDGTDG-GSKESGNNGKGKGKGSGDGDGNRNGNGDGNG---RPKG 501
Query: 258 NVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD 395
+ GN+ +H DD D G + +G NG + D
Sbjct: 502 D--------GNIKINIHSPDDNDLLEKDENGPNGKGGAGNGNGDGD 539
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 30.3 bits (65), Expect = 0.58
Identities = 28/106 (26%), Positives = 44/106 (41%)
Frame = +3
Query: 78 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFG 257
G+ +G G DD GT+ G + G + G+ G + D + G+G+ N R G
Sbjct: 446 GNPKGEWDDGDGDEDDDGTDG-GSKESGNNGKGKGKGSGDGDGNRNGNGDGNG---RPKG 501
Query: 258 NVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD 395
+ GN+ +H DD D G + +G NG + D
Sbjct: 502 D--------GNIKINIHSPDDNDLLEKDENGPNGKGGAGNGNGDGD 539
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 30.3 bits (65), Expect = 0.58
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 296 SEIAADPVDVEDIAEEPLPEVVILPTP 216
S AA P DV D A E P+V++ PTP
Sbjct: 556 SAAAAAPEDVPDAAPEDPPKVILKPTP 582
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 29.9 bits (64), Expect = 0.76
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 96 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFG 242
G S +D G +++G DD G D G H D G N+N G
Sbjct: 360 GHGHSHDHNDHG-HSHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNHG 407
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 29.9 bits (64), Expect = 0.76
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 96 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFG 242
G S +D G +++G DD G D G H D G N+N G
Sbjct: 378 GHGHSHDHNDHG-HSHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNHG 425
>AF036693-4|AAK29786.1| 360|Caenorhabditis elegans Hypothetical
protein C49A9.6 protein.
Length = 360
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 207 RKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVD 314
RKYGS N FG+ L G+ N + + G+ VH++
Sbjct: 308 RKYGSAFNKYFGEILEGDSENTKLSTDHNGKMVHIE 343
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 186 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 365
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 302 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 361
Query: 366 TFNNGRSNRDGLVG 407
TFN+G GL G
Sbjct: 362 TFNDGAPGPPGLPG 375
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 186 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 365
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 301 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 360
Query: 366 TFNNGRSNRDGLVG 407
TFN+G GL G
Sbjct: 361 TFNDGAPGPPGLPG 374
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 186 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 365
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 301 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 360
Query: 366 TFNNGRSNRDGLVG 407
TFN+G GL G
Sbjct: 361 TFNDGAPGPPGLPG 374
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 186 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 365
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 302 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 361
Query: 366 TFNNGRSNRDGLVG 407
TFN+G GL G
Sbjct: 362 TFNDGAPGPPGLPG 375
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 186 GFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 365
G R + R +G G R + I G+ G G + D +G++ G G
Sbjct: 338 GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGG 397
Query: 366 TFNNGRSNRDGLVG 407
TFN+G GL G
Sbjct: 398 TFNDGAPGPPGLPG 411
>Z93381-1|CAB07604.1| 509|Caenorhabditis elegans Hypothetical
protein F28G4.1 protein.
Length = 509
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 135 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 248
N Y ++F ED+ G H + ++ F +G N GQ+
Sbjct: 422 NQYNPENFSEDKIGSRHAYSDIPF---SAGPRNCIGQK 456
>AF039712-1|AAK21402.2| 239|Caenorhabditis elegans 2 (zwei)
ig-domain protein protein7 protein.
Length = 239
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 249 LFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGR 383
L+ N+ N+ + NLG H+D + E + +S G +GT N G+
Sbjct: 46 LYANIQNLWCGAQNLGE--HIDVEYGEFTRLSDGKVFKGTVNQGK 88
>Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 291 LGRTVHVDDDLDEGSAISAGDSHRGTFNN 377
+ RT++V+DD G S GDS +GT N+
Sbjct: 698 IDRTLYVEDD---GDGTSLGDSKKGTLNS 723
>AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 291 LGRTVHVDDDLDEGSAISAGDSHRGTFNN 377
+ RT++V+DD G S GDS +GT N+
Sbjct: 698 IDRTLYVEDD---GDGTSLGDSKKGTLNS 723
>AC025727-4|AAG23388.3| 463|Caenorhabditis elegans Hypothetical
protein Y73E7A.2 protein.
Length = 463
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 243 QRLFGNVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRD 395
+ LFG++ I+G+ GN ++ ++D DE I D + N D
Sbjct: 63 KELFGDISEISGLQGNFDKS-ESEEDEDEEEKIDNFDESEPEIEDEEENED 112
>Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical
protein F28C6.5 protein.
Length = 219
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 314 INVNRPSEIAADPVDVEDIAEEPL-PEVVILPTPVFPE 204
++V P ++ A P+D E + EPL P +ILP+ + E
Sbjct: 81 LHVPEPQDVVAVPLDEEALHGEPLFPPELILPSELAAE 118
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 135 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGN 290
N+YG + G + G+ G N YGS +NN+G G+ N GN
Sbjct: 305 NSYGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGN 356
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +3
Query: 120 DDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLG 296
D G+NN G D++G + + G GSG N N N G GN G
Sbjct: 319 DQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNNGNSGGSWGNGG 377
Score = 27.5 bits (58), Expect = 4.1
Identities = 26/112 (23%), Positives = 44/112 (39%)
Frame = +3
Query: 78 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFG 257
GS G++D + D+ NN + ++ +G RN D Y NN
Sbjct: 149 GSSRNDGENDDWNNGDQNNNN---NFNSKNNRMNKYGNRN-DGDDYNGNGNNQDNWNSGS 204
Query: 258 NVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVN 413
N NG G G + ++ +E + +++R + NN +N G N
Sbjct: 205 NSGGYNGGGGGSGGGSNWNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTN 256
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 135 NNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGN 290
N+YG + G + G+ G N YGS +NN+G G+ N GN
Sbjct: 305 NSYGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGN 356
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +3
Query: 120 DDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNINGISGNLG 296
D G+NN G D++G + + G GSG N N N G GN G
Sbjct: 319 DQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNNGNSGGSWGNGG 377
Score = 27.5 bits (58), Expect = 4.1
Identities = 26/112 (23%), Positives = 44/112 (39%)
Frame = +3
Query: 78 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFG 257
GS G++D + D+ NN + ++ +G RN D Y NN
Sbjct: 149 GSSRNDGENDDWNNGDQNNNN---NFNSKNNRMNKYGNRN-DGDDYNGNGNNQDNWNSGS 204
Query: 258 NVLNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVN 413
N NG G G + ++ +E + +++R + NN +N G N
Sbjct: 205 NSGGYNGGGGGSGGGSNWNNGDNENDGWNNNNNNRKSNNNNNNNYGNSWGTN 256
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +3
Query: 93 LGKSDSGSRDDRGTNNY-GLDDFGEDRAGELHGFRNVDFRKYGSGEN--NNFGQRLFGNV 263
+G D SRD G NNY F +D E+ R + ++ N F QR+ NV
Sbjct: 70 MGSWDEYSRDTSGENNYHHTSSFDDDLLLEIDSSRGAAVARLDRTQDDLNKFRQRIDNNV 129
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 398 PISVGPAIVEGAPVTV-TGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILP 222
P V P + PVT AD P V + SE +PVDV+ P+V + P
Sbjct: 555 PARVPPQVPSQVPVTGGVAADEPPPPCSYSPVAQSSESKIEPVDVKPRVAPVPPQVPVTP 614
Query: 221 T 219
T
Sbjct: 615 T 615
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 398 PISVGPAIVEGAPVTV-TGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILP 222
P V P + PVT AD P V + SE +PVDV+ P+V + P
Sbjct: 555 PARVPPQVPSQVPVTGGVAADEPPPPCSYSPVAQSSESKIEPVDVKPRVAPVPPQVPVTP 614
Query: 221 T 219
T
Sbjct: 615 T 615
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 90 GLGKSDSGSRDDRGTNNYGLDDFGED 167
G G+ ++G R D+G L++FG D
Sbjct: 615 GFGEQENGIRADKGQKPCDLEEFGSD 640
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 90 GLGKSDSGSRDDRGTNNYGLDDFGED 167
G G+ ++G R D+G L++FG D
Sbjct: 615 GFGEQENGIRADKGQKPCDLEEFGSD 640
>Z81077-15|CAN99680.1| 664|Caenorhabditis elegans Hypothetical
protein F36A2.1d protein.
Length = 664
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 117 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKY-GSGENNNFGQRLFG 257
RDDRG +NY + +DR G + N ++ GSG ++N R G
Sbjct: 600 RDDRGRDNYQNSRY-DDRRGSSAPYNNQRGDRWRGSGSHHNDRNRNSG 646
>Z81077-14|CAN99679.1| 662|Caenorhabditis elegans Hypothetical
protein F36A2.1c protein.
Length = 662
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 117 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKY-GSGENNNFGQRLFG 257
RDDRG +NY + +DR G + N ++ GSG ++N R G
Sbjct: 598 RDDRGRDNYQNSRY-DDRRGSSAPYNNQRGDRWRGSGSHHNDRNRNSG 644
>Z81077-2|CAD56583.2| 656|Caenorhabditis elegans Hypothetical
protein F36A2.1b protein.
Length = 656
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 117 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKY-GSGENNNFGQRLFG 257
RDDRG +NY + +DR G + N ++ GSG ++N R G
Sbjct: 592 RDDRGRDNYQNSRY-DDRRGSSAPYNNQRGDRWRGSGSHHNDRNRNSG 638
>Z81077-1|CAB03066.2| 658|Caenorhabditis elegans Hypothetical
protein F36A2.1a protein.
Length = 658
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 117 RDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKY-GSGENNNFGQRLFG 257
RDDRG +NY + +DR G + N ++ GSG ++N R G
Sbjct: 594 RDDRGRDNYQNSRY-DDRRGSSAPYNNQRGDRWRGSGSHHNDRNRNSG 640
>U41017-3|AAC48213.1| 548|Caenorhabditis elegans Hypothetical
protein T26C11.4 protein.
Length = 548
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +3
Query: 120 DDRGTNNYGLDDF-GEDRAGELHGF---RNVDFRKYGSGENNNFGQRLFGN 260
+DR +N+G + + R G+ GF RNVD Y G+N ++ F N
Sbjct: 290 EDRSGSNHGHSNRDSKARRGQDSGFNHRRNVDSDGYNGGQNRDYFDDGFSN 340
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 334 VPSAPVTVTGAPSTMAGPTEMGS 402
+PSAPV++ G PS+ GS
Sbjct: 131 IPSAPVSIAGTPSSRHNSISAGS 153
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 96 GKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSG 224
G+ G R RG++ G FG G GFR D +G G
Sbjct: 157 GRGRGGDRGGRGSDRGGRGGFGRGGGG---GFRGGDRGGFGGG 196
>AC006607-3|AAK68172.1| 408|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 10
protein.
Length = 408
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +3
Query: 78 GSVEGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRN-VDFRKYGSGENNNFGQRLF 254
GS+ +G + G GT G++ + G N + G N FGQ F
Sbjct: 66 GSMGSMGMNTMGMNTGFGTFGTGMESLYGGATQQAFGAYNPYGNGLFNFGSNGMFGQNAF 125
Query: 255 GNVLNIN 275
G N N
Sbjct: 126 GTGFNNN 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,363,494
Number of Sequences: 27780
Number of extensions: 153912
Number of successful extensions: 712
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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