Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k16r
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    30   0.71 
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    29   0.94 
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    29   1.6  
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related...    28   2.9  
At1g30780.1 68414.m03763 F-box family protein                          28   2.9  
At4g08350.1 68417.m01380 KOW domain-containing transcription fac...    27   3.8  
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327    27   3.8  
At4g28080.1 68417.m04027 expressed protein                             27   5.0  
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    27   5.0  
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ...    27   6.6  
At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containi...    27   6.6  
At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containi...    27   6.6  
At4g02160.1 68417.m00288 hypothetical protein                          26   8.7  
At3g20155.1 68416.m02555 hypothetical protein                          26   8.7  
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4...    26   8.7  
At2g21590.1 68415.m02568 glucose-1-phosphate adenylyltransferase...    26   8.7  

>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 312 DDDLDEGSAISAGDSHRGTFNNGRSNRDGL 401
           DDD DE   +SA  S +  F N  S+RDG+
Sbjct: 445 DDDEDENRTVSASSSKQSRFRN-NSSRDGI 473


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -2

Query: 407 TYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVI 228
           T  P+ V  A V  + + VTG    P+      +     ++  PV    +  EP     +
Sbjct: 245 TQSPVKVDRATVAPS-IPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTSM 303

Query: 227 LPTPVFPEI 201
            P P FP I
Sbjct: 304 APVPSFPHI 312


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 99  KSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 248
           +S  G   DR + + G   FG  R+G     R+  F  +GS  ++  G R
Sbjct: 552 RSPEGYGSDRSSQSGGRSSFGGGRSGGSSNNRSSGFGDFGSDRSSQSGGR 601


>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 244

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 264 LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 398
           +N+N  S +   T  ++ DL  G + S GDS+    NN  S+ DG
Sbjct: 142 MNMNNYSSHALSTDDINLDLTLGPSKSIGDSNNIINNNTNSSFDG 186


>At1g30780.1 68414.m03763 F-box family protein 
          Length = 482

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 278 PVDVEDIAEEPLPEVVILPTPVFPEID 198
           P D+  +A  PLP+V +LP P FP+ +
Sbjct: 75  PPDLPLLAP-PLPDVPLLPPPAFPDFE 100


>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
           family protein chromatin structural protein homolog
           Supt5hp - Mus musculus,PID:g2754752
          Length = 1029

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 27/89 (30%), Positives = 37/89 (41%)
 Frame = +3

Query: 87  EGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVL 266
           E  G+   GSR  RG +N+ +DD+ E+ + E     + D   YGS      G +   +  
Sbjct: 32  EERGRGGGGSRRKRGRSNF-IDDYAEEDSQE----EDDDDEDYGSSR----GGKGAASKR 82

Query: 267 NINGISGNLGRTVHVDDDLDEGSAISAGD 353
                S  L R  H  DD DE     A D
Sbjct: 83  KKPSASIFLDREAHQVDDEDEEEEDEAED 111


>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
          Length = 859

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 273 NGISGNLGRTVHVDDDLDEGSAISAGDS 356
           NG  G LG+  H++D +   ++++AG+S
Sbjct: 68  NGSKGKLGKAAHLEDWITTITSLTAGES 95


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 300  TVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVN 413
            TVH DDD DEG   +     +  F++GR  R  L  +N
Sbjct: 1078 TVHEDDDSDEGWQEAV---PKNRFSSGRRTRPSLAKLN 1112


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 153 DFGEDRAGELHGFRNVDFRKYGSGENNNFG-QRLFGNVLNINGISGNLGRTVHVDDDLDE 329
           DFGE  + ++   +   F ++ + ++       L G V+  N +  + GR+ +     D 
Sbjct: 349 DFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDS 408

Query: 330 GSAISAGDSHRGTFNNGRSNRD 395
           G+  + G S    +NNG +N+D
Sbjct: 409 GNQWNGGYSRGQGYNNGYANQD 430


>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
           putative transcriptional coactivator ALY, Mus musculus,
           EMBL:MMU89876
          Length = 288

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 222 GENNNFGQRLFGNV-LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 365
           G NN+    L G V +N+ G++G L RTV +         +  G   RG
Sbjct: 169 GGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRG 217


>At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containing
           protein low similarity to TPR-containing protein
           involved in spermatogenesis TPIS [Mus musculus]
           GI:6272682; contains Pfam profile PF00515:
           tetratricopeptide repeat (TPR) domain
          Length = 456

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 78  GSVEGLGKSDSGSRDDRGTNNYGLDDFG 161
           GS+ G G   SGS+  +  NN   D FG
Sbjct: 215 GSLVGFGSKSSGSKPGKVNNNAQNDTFG 242


>At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containing
           protein low similarity to TPR-containing protein
           involved in spermatogenesis TPIS [Mus musculus]
           GI:6272682; contains Pfam profile PF00515:
           tetratricopeptide repeat (TPR) domain
          Length = 475

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 78  GSVEGLGKSDSGSRDDRGTNNYGLDDFG 161
           GS+ G G   SGS+  +  NN   D FG
Sbjct: 215 GSLVGFGSKSSGSKPGKVNNNAQNDTFG 242


>At4g02160.1 68417.m00288 hypothetical protein
          Length = 183

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 78  GSVEGLGKSDSGSRDDRGTNNYGLDDFGED 167
           GS + L   D    DD    NYG DD G++
Sbjct: 118 GSAKSLRDMDCLDEDDDDDENYGNDDGGDE 147


>At3g20155.1 68416.m02555 hypothetical protein
          Length = 160

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 308 VNRPSEIAADPVDVEDIAEEPLPEVV 231
           V  PS   A+  DV+D    PLPEVV
Sbjct: 118 VEAPSIGTAETKDVKDTVPPPLPEVV 143


>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
           HD-ZIP protein 4 identical to  Homeobox-leucine zipper
           protein ATHB-4 (HD-ZIP protein ATHB-4)  (SP:P92953)
           [Arabidopsis thaliana]
          Length = 318

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 334 VPSAPVTVTGAPSTMAGPTEMG 399
           V S+  TVT APST   PT +G
Sbjct: 276 VSSSAATVTAAPSTTTTPTVVG 297


>At2g21590.1 68415.m02568 glucose-1-phosphate adenylyltransferase
           large subunit, putative / ADP-glucose pyrophosphorylase,
           putative strong similarity to SP|P55231
          Length = 523

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 FRNVDFRKYGSGENNNFGQRLFGNVL 266
           FRNV+ R YG   NNN   + FG+ L
Sbjct: 21  FRNVENRFYGEKNNNNGLCKRFGSDL 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,983,342
Number of Sequences: 28952
Number of extensions: 144329
Number of successful extensions: 519
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)