Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k16f
(451 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re... 30 0.83
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 29 1.1
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 1.9
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related... 28 3.4
At1g30780.1 68414.m03763 F-box family protein 28 3.4
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 27 4.4
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327 27 4.4
At4g28080.1 68417.m04027 expressed protein 27 5.9
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 27 5.9
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 7.7
At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containi... 27 7.7
At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containi... 27 7.7
>At3g27550.1 68416.m03443 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 491
Score = 29.9 bits (64), Expect = 0.83
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 103 DDDLDEGSAISAGDSHRGTFNNGRSNRDGL 14
DDD DE +SA S + F N S+RDG+
Sbjct: 445 DDDEDENRTVSASSSKQSRFRN-NSSRDGI 473
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +2
Query: 8 TYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVI 187
T P+ V A V + + VTG P+ + ++ PV + EP +
Sbjct: 245 TQSPVKVDRATVAPS-IPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTSM 303
Query: 188 LPTPVFPEI 214
P P FP I
Sbjct: 304 APVPSFPHI 312
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 316 KSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 167
+S G DR + + G FG R+G R+ F +GS ++ G R
Sbjct: 552 RSPEGYGSDRSSQSGGRSSFGGGRSGGSSNNRSSGFGDFGSDRSSQSGGR 601
>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 244
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 151 LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 17
+N+N S + T ++ DL G + S GDS+ NN S+ DG
Sbjct: 142 MNMNNYSSHALSTDDINLDLTLGPSKSIGDSNNIINNNTNSSFDG 186
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 137 PVDVEDIAEEPLPEVVILPTPVFPEID 217
P D+ +A PLP+V +LP P FP+ +
Sbjct: 75 PPDLPLLAP-PLPDVPLLPPPAFPDFE 100
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 27.5 bits (58), Expect = 4.4
Identities = 27/89 (30%), Positives = 37/89 (41%)
Frame = -1
Query: 328 EGLGKSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVL 149
E G+ GSR RG +N+ +DD+ E+ + E + D YGS G + +
Sbjct: 32 EERGRGGGGSRRKRGRSNF-IDDYAEEDSQE----EDDDDEDYGSSR----GGKGAASKR 82
Query: 148 NINGISGNLGRTVHVDDDLDEGSAISAGD 62
S L R H DD DE A D
Sbjct: 83 KKPSASIFLDREAHQVDDEDEEEEDEAED 111
>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
Length = 859
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 142 NGISGNLGRTVHVDDDLDEGSAISAGDS 59
NG G LG+ H++D + ++++AG+S
Sbjct: 68 NGSKGKLGKAAHLEDWITTITSLTAGES 95
>At4g28080.1 68417.m04027 expressed protein
Length = 1660
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 115 TVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVN 2
TVH DDD DEG + + F++GR R L +N
Sbjct: 1078 TVHEDDDSDEGWQEAV---PKNRFSSGRRTRPSLAKLN 1112
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -1
Query: 262 DFGEDRAGELHGFRNVDFRKYGSGENNNFG-QRLFGNVLNINGISGNLGRTVHVDDDLDE 86
DFGE + ++ + F ++ + ++ L G V+ N + + GR+ + D
Sbjct: 349 DFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDS 408
Query: 85 GSAISAGDSHRGTFNNGRSNRD 20
G+ + G S +NNG +N+D
Sbjct: 409 GNQWNGGYSRGQGYNNGYANQD 430
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 193 GENNNFGQRLFGNV-LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRG 50
G NN+ L G V +N+ G++G L RTV + + G RG
Sbjct: 169 GGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRG 217
>At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containing
protein low similarity to TPR-containing protein
involved in spermatogenesis TPIS [Mus musculus]
GI:6272682; contains Pfam profile PF00515:
tetratricopeptide repeat (TPR) domain
Length = 456
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 337 GSVEGLGKSDSGSRDDRGTNNYGLDDFG 254
GS+ G G SGS+ + NN D FG
Sbjct: 215 GSLVGFGSKSSGSKPGKVNNNAQNDTFG 242
>At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containing
protein low similarity to TPR-containing protein
involved in spermatogenesis TPIS [Mus musculus]
GI:6272682; contains Pfam profile PF00515:
tetratricopeptide repeat (TPR) domain
Length = 475
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 337 GSVEGLGKSDSGSRDDRGTNNYGLDDFG 254
GS+ G G SGS+ + NN D FG
Sbjct: 215 GSLVGFGSKSSGSKPGKVNNNAQNDTFG 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,016,635
Number of Sequences: 28952
Number of extensions: 167596
Number of successful extensions: 553
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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