Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k15r
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18) 129 2e-30
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13) 33 0.26
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15) 33 0.26
SB_526| Best HMM Match : GRP (HMM E-Value=8.5) 31 1.1
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 31 1.4
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) 31 1.4
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
Length = 327
Score = 129 bits (312), Expect = 2e-30
Identities = 59/83 (71%), Positives = 70/83 (84%)
Frame = -2
Query: 691 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 512
K TIGK++KM HINYR+R LQD R FIGTF AFDKHMN+ILGDC+EFRKIK K+SK
Sbjct: 23 KPTIGKSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQ 82
Query: 511 DREEKRTLGFVLLRGENIVSLTI 443
+REEKR LG VLLRGE++VS+T+
Sbjct: 83 EREEKRVLGLVLLRGEHLVSMTV 105
>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = -2
Query: 676 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 545
+ +++ +N +RV + D RT IG+F DK N+ILG C+EF
Sbjct: 29 QRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEF 72
>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
Length = 75
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 652 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 548
++ R+ V +++ R G A+D+H+N+IL D EE
Sbjct: 24 LDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEE 58
>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
Length = 443
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = -2
Query: 649 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 482
N +V + +++R + KAFD+H N++L + +E K+ K + + R +
Sbjct: 29 NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKAKPVNKDRYIAK 88
Query: 481 VLLRGENIV 455
+ LRG++++
Sbjct: 89 MFLRGDSVI 97
>SB_526| Best HMM Match : GRP (HMM E-Value=8.5)
Length = 149
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 221 HDGWPSSRNDGSSSWHGSWWART-GSSRNAT 132
+DGW ++ DG ++ +G W T G+ RNAT
Sbjct: 85 YDGWNATNGDGWNATNGDGWNGTNGNGRNAT 115
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 275 GTRKSWSTFCSSSNARRPHDGW-PSSRNDGSSSWHGSWWARTGSSRNAT 132
GT W+ S+ +P G P R +GS+ G+WW T R +T
Sbjct: 314 GTLLGWTRIGGSAFDNQPTYGDNPFHRGEGSAGLDGNWWISTYEDRPST 362
>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
Length = 1423
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 275 GTRKSWSTFCSSSNARRPHDGW-PSSRNDGSSSWHGSWWARTGSSRNAT 132
GT W+ S+ +P G P R +GS+ G+WW T R +T
Sbjct: 11 GTLLGWTRIGGSAFDNQPTYGDNPFHRGEGSAGLDGNWWISTYEDRPST 59
>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -2
Query: 712 YLPNHSDKMTIGKNNKMQQHINY--RVRVILQDSR 614
++P H+ M IGK +M + I + RVR I+ SR
Sbjct: 334 FIPEHAMGMVIGKKGRMLEEIKHKTRVRPIIDKSR 368
>SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 552 KNSEKLNLKIVKLQTEKKK 496
K KLN+K+ KL+TEKKK
Sbjct: 34 KEVRKLNIKVEKLKTEKKK 52
>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 658 VASYCFCRSSFYRSD*EDITRYLESFNLLQRYSLDSC 768
V ++ FC SF RSD ++ R+L + +R+ D C
Sbjct: 373 VCNWLFCGKSFTRSD--ELQRHLRTHTGEKRFQCDEC 407
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,244,100
Number of Sequences: 59808
Number of extensions: 334043
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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