Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k15r
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.45 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   4.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   4.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 245 SSSNARRPHDGWPSSRNDGSSSW 177
           S  N  R H G  SS + GS SW
Sbjct: 389 SGENNSRGHSGQSSSHHHGSKSW 411


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 555 AKNSEKLNLKIVKLQTEKKKELWVL 481
           ++  +K+  K+V+   + K E+WVL
Sbjct: 79  SEKQKKIADKVVQFLIDNKPEIWVL 103


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 555 AKNSEKLNLKIVKLQTEKKKELWVL 481
           ++  +K+  K+V+   + K E+WVL
Sbjct: 79  SEKQKKIADKVVQFLIDNKPEIWVL 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,736
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)