Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k15r
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 108 4e-24
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 107 1e-23
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 107 1e-23
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 47 1e-05
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 47 1e-05
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 40 0.002
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 37 0.013
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 36 0.023
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 36 0.040
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 36 0.040
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 34 0.12
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 33 0.28
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 33 0.28
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 33 0.28
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 33 0.28
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 33 0.28
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 33 0.28
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 32 0.49
At1g77770.2 68414.m09056 expressed protein 31 0.65
At1g77770.1 68414.m09055 expressed protein 31 0.65
At3g62370.1 68416.m07006 expressed protein 29 4.6
At1g68140.1 68414.m07783 expressed protein 29 4.6
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 108 bits (260), Expect = 4e-24
Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Frame = -2
Query: 688 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI---KSKNSK 518
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 517 TADREEKRTLGFVLLRGENIVSLTI 443
+REE+RTLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 107 bits (256), Expect = 1e-23
Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Frame = -2
Query: 688 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK--T 515
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 514 ADREEKRTLGFVLLRGENIVSLTI 443
+RE++RTLG VLLRGE ++S+T+
Sbjct: 61 EEREDRRTLGLVLLRGEEVISMTV 84
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 107 bits (256), Expect = 1e-23
Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Frame = -2
Query: 688 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK--T 515
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 514 ADREEKRTLGFVLLRGENIVSLTI 443
+RE++RTLG VLLRGE ++S+T+
Sbjct: 61 EEREDRRTLGLVLLRGEEVISMTV 84
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = -2
Query: 652 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 482
++ R+ V L+ R G AFD+H+N+ILGD EE + +T + R KRT+ F
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79
Query: 481 VLLRGENIV 455
+ +RG+ ++
Sbjct: 80 LFVRGDGVI 88
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = -2
Query: 652 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKSKNSKTADREEKRTLGF 482
I R+ V L+ R G AFD+H+N+ILGD EE +I + + R KRT+ F
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79
Query: 481 VLLRGENIV 455
+ +RG+ ++
Sbjct: 80 LFVRGDGVI 88
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related /
snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = -2
Query: 670 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 491
+++++ + ++ V ++D R F+G F DK N+IL D E+R I+ + E+R
Sbjct: 25 SRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPT---EQRC 81
Query: 490 LGFVLL 473
LG +L+
Sbjct: 82 LGMILI 87
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -2
Query: 640 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 461
+ VI D R +G K FD+ N+IL + E + T + ++ LG ++RG+N
Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHE------RVFSTKEGVQQHVLGLYIIRGDN 68
Query: 460 I 458
I
Sbjct: 69 I 69
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/77 (23%), Positives = 45/77 (58%)
Frame = -2
Query: 679 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 500
G+ ++++++ ++++ L +R +GT + FD+ MNL++ N+ + ++
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVV-----------DNTVEVNGDD 53
Query: 499 KRTLGFVLLRGENIVSL 449
K +G V++RG +IV++
Sbjct: 54 KTDIGMVVIRGNSIVTV 70
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = -2
Query: 673 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEK 497
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE R I ++
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE--RVI------VGEQYCD 63
Query: 496 RTLGFVLLRGENIV 455
LG ++RGEN+V
Sbjct: 64 IPLGLYVIRGENVV 77
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = -2
Query: 673 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEK 497
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE R I ++
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE--RVI------VGEQYCD 63
Query: 496 RTLGFVLLRGENIV 455
LG ++RGEN+V
Sbjct: 64 IPLGLYVIRGENVV 77
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/77 (23%), Positives = 43/77 (55%)
Frame = -2
Query: 679 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 500
G+ ++++++ ++++ L +R GT + FD+ MNL++ N+ + +
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVV-----------DNTVEVNGND 53
Query: 499 KRTLGFVLLRGENIVSL 449
K +G V++RG +IV++
Sbjct: 54 KTDIGMVVIRGNSIVTV 70
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -2
Query: 664 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 485
+Q ++ + Q G FD++MNL+L + EE IK K ++ LG
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV-SIKKKT--------RKPLG 71
Query: 484 FVLLRGENI 458
+LL+G+NI
Sbjct: 72 RILLKGDNI 80
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 649 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 482
N +V + +++R +G +AFD+H N++L + E K K R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 481 VLLRGENIV 455
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 649 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 482
N +V + +++R +G +AFD+H N++L + E K K R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 481 VLLRGENIV 455
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 649 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 482
N +V + +++R +G +AFD+H N++L + E K K R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 481 VLLRGENIV 455
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 649 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 482
N +V + +++R +G +AFD+H N++L + E K K R +
Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 93
Query: 481 VLLRGENIV 455
+ LRG++++
Sbjct: 94 MFLRGDSVI 102
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = -2
Query: 673 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 494
+ + +++ ++ V+L+D R +G ++FD+ N +L + E R I D
Sbjct: 12 STSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYE-RVI------VGDLYCDI 64
Query: 493 TLGFVLLRGENIV 455
LG ++RGEN+V
Sbjct: 65 PLGLYIIRGENVV 77
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = -2
Query: 664 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 485
+Q ++ + Q G FD++MNL+L + EE IK KN+ ++ LG
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV-SIK-KNT-------RKPLG 71
Query: 484 FVLLRGENI 458
+LL+G+NI
Sbjct: 72 RILLKGDNI 80
>At1g77770.2 68414.m09056 expressed protein
Length = 264
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 685 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 575
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At1g77770.1 68414.m09055 expressed protein
Length = 265
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 685 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 575
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = -1
Query: 218 DGWPSSRNDGSSS--WHGSWW 162
DG S ND S+ WHG+WW
Sbjct: 200 DGLGPSGNDSSAQNDWHGAWW 220
>At1g68140.1 68414.m07783 expressed protein
Length = 334
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 652 INYRVRVILQDSRTFIGTFKAFDKHMNL 569
+N + R+ +Q++ + GTFK KHM +
Sbjct: 140 LNLKKRICMQENCVYAGTFKELRKHMKV 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522,932
Number of Sequences: 28952
Number of extensions: 233983
Number of successful extensions: 663
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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