Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k15f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    77   2e-15
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    42   5e-05
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    36   0.005
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    36   0.005
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    36   0.006
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    34   0.019
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    33   0.032
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   3.7  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   4.9  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = +2

Query: 116 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRT 292
           KM   +N+ + V  +D RTF+G   AFD  MNL+L DC+E+R IK +N    +  EEKR 
Sbjct: 5   KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64

Query: 293 LGFVLLRGENIVSLTI 340
           LG V+LRGE IVSL++
Sbjct: 65  LGLVILRGEFIVSLSV 80


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 27/62 (43%), Positives = 33/62 (53%)
 Frame = +2

Query: 140 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 319
           RV+VI  D R  +G+ K FD   NLIL D   F +I S +       E   LG  LLRGE
Sbjct: 10  RVQVITNDGRVVLGSLKGFDHTTNLILSD--SFERIISMDQDM----ETIPLGVYLLRGE 63

Query: 320 NI 325
           N+
Sbjct: 64  NV 65


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +2

Query: 143 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK---RTLGFVLLR 313
           V V L+  R   G   A+D+H+N++LGD EE   I        D+  K   +    + +R
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81

Query: 314 GENIV 328
           G++++
Sbjct: 82  GDSVI 86


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 119 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 298
           + ++ + R++      R   G  K FD+ MNL+L D EE  +       T      R LG
Sbjct: 28  LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLG 84

Query: 299 FVLLRGENIV 328
            V++RG  +V
Sbjct: 85  LVVVRGTTLV 94


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 22/69 (31%), Positives = 36/69 (52%)
 Frame = +2

Query: 119 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 298
           +QQH    + +  Q      G  + FD+ MN++L D  +   + +KN+       KR LG
Sbjct: 20  LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ---VDAKNN-------KRELG 69

Query: 299 FVLLRGENI 325
            +LL+G+NI
Sbjct: 70  RILLKGDNI 78


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 95  MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 274
           MTI     + + I   + VI++  R F GT   FD ++N++L D  E+  +     K ++
Sbjct: 3   MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 33.1 bits (72), Expect = 0.032
 Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
 Frame = +2

Query: 92  KMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKSK 256
           + + G  + +QQ +    +V++  ++++  +   KAFD+H N++L + +E    +K  + 
Sbjct: 24  EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTAS 83

Query: 257 NSKTADREEKRTLGFVLLRGENIV 328
             K     + R +  + LRG+ +V
Sbjct: 84  GKKGKAINKDRFISKMFLRGDGVV 107


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 578 EGHPSWGL-LAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEH 411
           +GH SW   + F+  +  D ++ +  V    +LLLW D     + RP   +Y  + H
Sbjct: 403 QGHKSWVTDVIFDAWRCDDDNYRIASVGLDRKLLLW-DFSVSAIHRPKSAVYYVNHH 458


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 140 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 304
           +V   +QD   ++  FK+  K     +   E F++I   NS   D+  +    FV
Sbjct: 231 KVITSIQDLEDYMVVFKSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFV 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,626
Number of Sequences: 5004
Number of extensions: 33145
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)