Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k15f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 109 2e-24
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 47 1e-05
06_03_1120 - 27765613-27765963 41 7e-04
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 36 0.019
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 35 0.043
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 33 0.18
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 33 0.23
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 32 0.31
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 32 0.41
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 31 0.54
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 31 0.54
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619 30 1.2
02_05_0887 + 32516255-32517292 29 3.8
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 28 6.6
>07_01_0479 + 3606663-3607448
Length = 261
Score = 109 bits (262), Expect = 2e-24
Identities = 51/84 (60%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
Frame = +2
Query: 95 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSK-T 268
M+ K +KM Q +NYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ SK+SK T
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTT 60
Query: 269 ADREEKRTLGFVLLRGENIVSLTI 340
+REE+RTLG +LLRGE +VS+T+
Sbjct: 61 GEREERRTLGLLLLRGEEVVSMTV 84
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +2
Query: 131 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 301
++ R+ V L+ R G A+D+H+N+ILGD EE + +T + R KRT+ F
Sbjct: 27 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPF 86
Query: 302 VLLRGENIV 328
+ +RG+ ++
Sbjct: 87 LFVRGDGVI 95
>06_03_1120 - 27765613-27765963
Length = 116
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +2
Query: 116 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR---KIKSKNSKTADREEK 286
K+++ + R+ V + D R F+G F DK N++L D E+R + +S +S ++ E+
Sbjct: 24 KLRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTSARRRSPSSPSSSPAEQ 83
Query: 287 RTLGFVLL 310
R LG +L+
Sbjct: 84 RGLGLILI 91
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 119 MQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 292
M Q I R+++ L Q G FD++MNL+L D EE N K ++ +++
Sbjct: 10 MTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI------NVK---KDTRKS 60
Query: 293 LGFVLLRGENI 325
LG +LL+G+NI
Sbjct: 61 LGRILLKGDNI 71
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/77 (22%), Positives = 43/77 (55%)
Frame = +2
Query: 104 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 283
G+ ++++++ ++++ L +R +GT + FD+ MNL++ N+ + +
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVV-----------DNTVEVNGND 53
Query: 284 KRTLGFVLLRGENIVSL 334
K +G V++RG ++V +
Sbjct: 54 KTDIGMVVVRGNSVVMI 70
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +2
Query: 188 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 325
K FD++MNL+L + EE IK ++ +++LG +LL+G+NI
Sbjct: 97 KGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNI 133
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 149 VILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 328
V L +R IGT + FD+ MNL++ N+ + EK +G V++RG ++V
Sbjct: 34 VKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGNEKNDIGMVVIRGNSVV 82
Query: 329 SL 334
+
Sbjct: 83 MI 84
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +2
Query: 131 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 310
I ++ VI++ + +GT FD ++N++L D E+ TA+ L +LL
Sbjct: 88 IGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEY-------EYTAEGRRITKLDQILL 140
Query: 311 RGENI 325
G NI
Sbjct: 141 NGNNI 145
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 134 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 301
N +V + ++++ +G +AFD+H N++L + E K K + R +
Sbjct: 31 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 90
Query: 302 VLLRGENIV 328
+ LRG++++
Sbjct: 91 MFLRGDSVI 99
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 119 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 235
++ ++ + VI D R +GT + FD+ N+IL + E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 140 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGFVL 307
+V + Q+++ +G +AFD H N++L + E K K + R + +
Sbjct: 383 KVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 442
Query: 308 LRGENIV 328
LRG++++
Sbjct: 443 LRGDSVI 449
>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
Length = 398
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 122 QQHINYRVRVILQDSRTFIGTFKAFDKHMN 211
+Q++N + R + D +FIG++K KH+N
Sbjct: 152 RQYLNRKKRACMHDGCSFIGSYKELCKHVN 181
>02_05_0887 + 32516255-32517292
Length = 345
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 122 QQHINYRVRVILQDSRTFIGTFKAFDKHM 208
+ ++N + R +QD +F+GT+K KH+
Sbjct: 149 RSYLNGKRRTCMQDGCSFVGTYKELRKHV 177
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 86 SDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 265
+D+M + + + + I V D+R + D H++ + + EEF KI K +
Sbjct: 463 TDEM-VARLDSLDVEIGNHVSRCKADARLMKDELEKKDHHLSTVEKESEEFLKISEKKLE 521
Query: 266 TADRE 280
A RE
Sbjct: 522 DAKRE 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,954,628
Number of Sequences: 37544
Number of extensions: 191457
Number of successful extensions: 629
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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