BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10k15f (607 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 108 2e-24 At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 107 7e-24 At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 107 7e-24 At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 47 8e-06 At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 47 8e-06 At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 40 0.002 At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 37 0.009 At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 36 0.016 At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 36 0.028 At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 36 0.028 At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 34 0.084 At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 33 0.19 At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 33 0.19 At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 33 0.19 At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 33 0.19 At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 33 0.19 At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 33 0.19 At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 32 0.34 At1g77770.2 68414.m09056 expressed protein 31 0.45 At1g77770.1 68414.m09055 expressed protein 31 0.45 At1g68140.1 68414.m07783 expressed protein 29 3.2 At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ... 27 9.6 >At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative similar to SP|P27048 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Mus musculus} Length = 254 Score = 108 bits (260), Expect = 2e-24 Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 3/85 (3%) Frame = +2 Query: 95 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI---KSKNSK 265 M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEFRK+ K Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60 Query: 266 TADREEKRTLGFVLLRGENIVSLTI 340 +REE+RTLG VLLRGE ++S+T+ Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85 >At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative similar to SP|Q05856 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Drosophila melanogaster} Length = 257 Score = 107 bits (256), Expect = 7e-24 Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 2/84 (2%) Frame = +2 Query: 95 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK--T 268 M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ K Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60 Query: 269 ADREEKRTLGFVLLRGENIVSLTI 340 +RE++RTLG VLLRGE ++S+T+ Sbjct: 61 EEREDRRTLGLVLLRGEEVISMTV 84 >At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative similar to SP|Q05856 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Drosophila melanogaster} Length = 257 Score = 107 bits (256), Expect = 7e-24 Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 2/84 (2%) Frame = +2 Query: 95 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK--T 268 M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ K Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60 Query: 269 ADREEKRTLGFVLLRGENIVSLTI 340 +RE++RTLG VLLRGE ++S+T+ Sbjct: 61 EEREDRRTLGLVLLRGEEVISMTV 84 >At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein LSm3 (MDS017) [Mouse] Length = 98 Score = 47.2 bits (107), Expect = 8e-06 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%) Frame = +2 Query: 131 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 301 ++ R+ V L+ R G AFD+H+N+ILGD EE + +T + R KRT+ F Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79 Query: 302 VLLRGENIV 328 + +RG+ ++ Sbjct: 80 LFVRGDGVI 88 >At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein LSm3 (MDS017) [Mouse] Length = 97 Score = 47.2 bits (107), Expect = 8e-06 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Frame = +2 Query: 131 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKSKNSKTADREEKRTLGF 301 I R+ V L+ R G AFD+H+N+ILGD EE +I + + R KRT+ F Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79 Query: 302 VLLRGENIV 328 + +RG+ ++ Sbjct: 80 LFVRGDGVI 88 >At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related / snRNP-related contains similarity to snRNP-associated polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059 Length = 112 Score = 39.5 bits (88), Expect = 0.002 Identities = 20/66 (30%), Positives = 38/66 (57%) Frame = +2 Query: 113 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 292 +++++ + ++ V ++D R F+G F DK N+IL D E+R I+ + E+R Sbjct: 25 SRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPT---EQRC 81 Query: 293 LGFVLL 310 LG +L+ Sbjct: 82 LGMILI 87 >At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] SWISS-PROT:O95777 Length = 98 Score = 37.1 bits (82), Expect = 0.009 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +2 Query: 143 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 322 + VI D R +G K FD+ N+IL + E + T + ++ LG ++RG+N Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHE------RVFSTKEGVQQHVLGLYIIRGDN 68 Query: 323 I 325 I Sbjct: 69 I 69 >At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to SWISS-PROT:Q15357 small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens] Length = 79 Score = 36.3 bits (80), Expect = 0.016 Identities = 18/77 (23%), Positives = 45/77 (58%) Frame = +2 Query: 104 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 283 G+ ++++++ ++++ L +R +GT + FD+ MNL++ N+ + ++ Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVV-----------DNTVEVNGDD 53 Query: 284 KRTLGFVLLRGENIVSL 334 K +G V++RG +IV++ Sbjct: 54 KTDIGMVVIRGNSIVTV 70 >At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm, Cancer-associated Sm-like) [Homo sapiens] SWISS-PROT:O15116; contains Pfam profile: PF01423 Sm protein Length = 128 Score = 35.5 bits (78), Expect = 0.028 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 110 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEK 286 + + +++ ++ V+L+D R +GT ++FD+ N +L G CE R I ++ Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE--RVI------VGEQYCD 63 Query: 287 RTLGFVLLRGENIV 328 LG ++RGEN+V Sbjct: 64 IPLGLYVIRGENVV 77 >At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm, Cancer-associated Sm-like) [Homo sapiens] SWISS-PROT:O15116; contains Pfam profile: PF01423 Sm protein Length = 128 Score = 35.5 bits (78), Expect = 0.028 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 110 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEEFRKIKSKNSKTADREEK 286 + + +++ ++ V+L+D R +GT ++FD+ N +L G CE R I ++ Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE--RVI------VGEQYCD 63 Query: 287 RTLGFVLLRGENIV 328 LG ++RGEN+V Sbjct: 64 IPLGLYVIRGENVV 77 >At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) [Homo sapiens] SWISS-PROT:Q15357 Length = 80 Score = 33.9 bits (74), Expect = 0.084 Identities = 18/77 (23%), Positives = 43/77 (55%) Frame = +2 Query: 104 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 283 G+ ++++++ ++++ L +R GT + FD+ MNL++ N+ + + Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVV-----------DNTVEVNGND 53 Query: 284 KRTLGFVLLRGENIVSL 334 K +G V++RG +IV++ Sbjct: 54 KTDIGMVVIRGNSIVTV 70 >At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative similar to SWISS-PROT:P08578 small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE) [Chicken] Length = 88 Score = 32.7 bits (71), Expect = 0.19 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +2 Query: 119 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 298 +Q ++ + Q G FD++MNL+L + EE IK K ++ LG Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV-SIKKKT--------RKPLG 71 Query: 299 FVLLRGENI 325 +LL+G+NI Sbjct: 72 RILLKGDNI 80 >At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative similar to small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus] SWISS-PROT:P43330 Length = 108 Score = 32.7 bits (71), Expect = 0.19 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = +2 Query: 134 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 301 N +V + +++R +G +AFD+H N++L + E K K R + Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92 Query: 302 VLLRGENIV 328 + LRG++++ Sbjct: 93 MFLRGDSVI 101 >At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative similar to small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus] SWISS-PROT:P43330 Length = 108 Score = 32.7 bits (71), Expect = 0.19 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = +2 Query: 134 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 301 N +V + +++R +G +AFD+H N++L + E K K R + Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92 Query: 302 VLLRGENIV 328 + LRG++++ Sbjct: 93 MFLRGDSVI 101 >At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative similar to small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus] SWISS-PROT:P43330 Length = 108 Score = 32.7 bits (71), Expect = 0.19 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = +2 Query: 134 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 301 N +V + +++R +G +AFD+H N++L + E K K R + Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92 Query: 302 VLLRGENIV 328 + LRG++++ Sbjct: 93 MFLRGDSVI 101 >At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative similar to small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus] SWISS-PROT:P43330 Length = 109 Score = 32.7 bits (71), Expect = 0.19 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = +2 Query: 134 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 301 N +V + +++R +G +AFD+H N++L + E K K R + Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 93 Query: 302 VLLRGENIV 328 + LRG++++ Sbjct: 94 MFLRGDSVI 102 >At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm, Cancer-associated Sm-like) [Homo sapiens] SWISS-PROT:O15116 Length = 128 Score = 32.7 bits (71), Expect = 0.19 Identities = 20/73 (27%), Positives = 38/73 (52%) Frame = +2 Query: 110 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 289 + + +++ ++ V+L+D R +G ++FD+ N +L + E R I D Sbjct: 12 STSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYE-RVI------VGDLYCDI 64 Query: 290 TLGFVLLRGENIV 328 LG ++RGEN+V Sbjct: 65 PLGLYIIRGENVV 77 >At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative similar to SWISS-PROT:P08578 small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE) [Chicken] Length = 88 Score = 31.9 bits (69), Expect = 0.34 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = +2 Query: 119 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 298 +Q ++ + Q G FD++MNL+L + EE IK KN+ ++ LG Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV-SIK-KNT-------RKPLG 71 Query: 299 FVLLRGENI 325 +LL+G+NI Sbjct: 72 RILLKGDNI 80 >At1g77770.2 68414.m09056 expressed protein Length = 264 Score = 31.5 bits (68), Expect = 0.45 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +2 Query: 98 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 208 T+ K+ +M H N + R +QD+ +F+G F+ KHM Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132 >At1g77770.1 68414.m09055 expressed protein Length = 265 Score = 31.5 bits (68), Expect = 0.45 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +2 Query: 98 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 208 T+ K+ +M H N + R +QD+ +F+G F+ KHM Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132 >At1g68140.1 68414.m07783 expressed protein Length = 334 Score = 28.7 bits (61), Expect = 3.2 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 131 INYRVRVILQDSRTFIGTFKAFDKHMNL 214 +N + R+ +Q++ + GTFK KHM + Sbjct: 140 LNLKKRICMQENCVYAGTFKELRKHMKV 167 >At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 324 Score = 27.1 bits (57), Expect = 9.6 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Frame = +2 Query: 14 GN-CQV-NIAEAN*SFPNI**YLPNHSDKMTIGKNNKMQQHINYR--VRVILQDSRTFIG 181 GN CQ+ N N FP+ P + DK + Q+++YR ++ + ++ F Sbjct: 159 GNQCQILNPTPLNTIFPHQASIFPRNVDKFSFSPKQNPHQYVSYRQPLKRHCRPTKKFEN 218 Query: 182 TFKAFD 199 TF FD Sbjct: 219 TFSDFD 224 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,991,974 Number of Sequences: 28952 Number of extensions: 164862 Number of successful extensions: 456 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 437 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 446 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1206913392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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