Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k14r
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59370.1 68416.m06621 expressed protein hypothetical protein ... 33 0.15
At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related... 33 0.27
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 32 0.35
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 32 0.46
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.81
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma... 31 1.1
At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containi... 30 1.4
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 30 1.9
At4g21450.2 68417.m03102 vesicle-associated membrane family prot... 30 1.9
At4g21450.1 68417.m03103 vesicle-associated membrane family prot... 30 1.9
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 29 2.5
At1g64790.1 68414.m07346 translational activator family protein ... 29 3.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 3.3
At5g45830.1 68418.m05637 expressed protein low similarity to tum... 29 4.3
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 29 4.3
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR... 28 7.6
At1g20060.1 68414.m02511 kinesin motor protein-related 28 7.6
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 28 7.6
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 28 7.6
At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low ... 27 10.0
At5g52860.1 68418.m06561 ABC transporter family protein 27 10.0
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet... 27 10.0
At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein bet... 27 10.0
At3g16800.2 68416.m02145 protein phosphatase 2C, putative / PP2C... 27 10.0
At3g16800.1 68416.m02146 protein phosphatase 2C, putative / PP2C... 27 10.0
At2g36420.1 68415.m04471 expressed protein 27 10.0
At2g22610.1 68415.m02680 kinesin motor protein-related 27 10.0
At2g09910.1 68415.m01029 hypothetical protein 27 10.0
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 27 10.0
>At3g59370.1 68416.m06621 expressed protein hypothetical protein
F12F1.4 - Arabidopsis thaliana, EMBL:AC002131
Length = 95
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -1
Query: 404 VDNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIV 225
V +V + + ++ P + E EKTNE+ E + V E P ++E+ +
Sbjct: 9 VTSVAVEIVETEVNQHPEEVFVEDAEKTNEDEEEKAAV----ITETPTVVEEEKKAEEVT 64
Query: 224 DLPIEAQPEDLEKAQLVDLPVENVA 150
+ P E + E LE+ Q E VA
Sbjct: 65 ETPEEKKTEALEEKQTEVAAAEEVA 89
>At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 572
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 383 VEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPI 213
VE+ L + + + E N++ + S +SWVE P + + + I DLPI
Sbjct: 277 VEELKLNINKLRFSAKLAEAANDDYSSSSSSSIVSWVEIPISMSINIGEISIPDLPI 333
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 32.3 bits (70), Expect = 0.35
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Frame = +2
Query: 341 PRCSQGRLVNRRPQLEHRRCLRS*QNQPGH----RRPQLEHRRCLRSLQNQPGHRRPQLE 508
P Q + Q + ++ ++ Q Q H + PQL+ ++ Q Q H+ QL+
Sbjct: 679 PNQQQQQQQQLHQQQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQ 738
Query: 509 HRGFLRSLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREF----QCQKSQRCLHFRSIQ 676
H + Q Q +H +L+H + Q + Q++ Q Q+ L+ Q
Sbjct: 739 HHQQQQQQQQQQQQQHQLTQLQHHHQQQQQASPLNQMQQQTSPLNQMQQQTSPLNQMQQQ 798
Query: 677 SRPRRVL 697
+P++++
Sbjct: 799 QQPQQMV 805
>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1503
Score = 31.9 bits (69), Expect = 0.46
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1
Query: 308 ENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLS 132
E DS V S A+++ G+V+V EA ++ +K VD + N+ EP+DL+
Sbjct: 462 EGDSMVDSSVVDSVDADINVAEPGVVVVGAAKEAVIKEDDKDDEVDKTISNIEEPDDLT 520
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 31.1 bits (67), Expect = 0.81
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -1
Query: 290 GSISWVEYPA-ELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVN 114
G+ S+ + A L D L I D ++ +L ++ DLPV EPE+L +VVN
Sbjct: 141 GASSFCAFAAFPLLRDKGYLPIQDSRLDEPVTELPPLKVKDLPVMETNEPEEL--YRVVN 198
Query: 113 PIVENSQS 90
+VE ++S
Sbjct: 199 DMVEGAKS 206
>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
PF04937: Protein of unknown function (DUF 659)
Length = 433
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 272 EYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQV 120
E P+E DE+ NG + P E EDLE + D+ ++ E ++ V V
Sbjct: 375 EGPSERDEEPNGEPVYQTPNEKPREDLESHEEHDITIDIEFESDNEQVVNV 425
>At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 698
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 525 EAYRVSREIGILNWSFDIFYEVYRINREIDVVNGNFNVKNRNVV 656
EAY +S E G D++ + YR+++ I+++ G V+ V+
Sbjct: 522 EAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEKDAVI 565
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -1
Query: 329 EKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVENVA 150
EK EE E + S+ E PAE D IE + ED EK + D +
Sbjct: 331 EKEEEEQEEEEAEHSVQ-PEEPAEADNQKENSEGDQPLIEEEEEDQEKIEEEDAKPSFLI 389
Query: 149 EPEDLSPVQVVNP 111
+ +DL + +NP
Sbjct: 390 DTDDLLGLNEINP 402
>At4g21450.2 68417.m03102 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 212
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 187 FSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 282
F SSG + S TSPFPS ++S+ S+ L
Sbjct: 23 FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54
>At4g21450.1 68417.m03103 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 295
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 187 FSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 282
F SSG + S TSPFPS ++S+ S+ L
Sbjct: 23 FRNSSGHRNAASSAATSPFPSGASSSSTSSHL 54
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 139 SSGSATFSTGRSTSW--AFSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 282
SS S +TG S S+ A S S SI +T +SPF SS+SAG + L
Sbjct: 243 SSSSIFGATGSSPSFSVASSASGSSPSIFGATGSSPFFGSSSSAGSTPSL 292
>At1g64790.1 68414.m07346 translational activator family protein
similar to HsGCN1 [Homo sapiens] GI:2282576
Length = 2440
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 349 TSWMNQLKRRMRKSRMTVKLARSAGLNILLNWTKMETDLLLLIYLLRHNPKI*RKPSLLT 170
TS + L + + ++++V L L+ NW +L + LL+HNP SL +
Sbjct: 2224 TSMLGVLSQYLEAAQLSVLLQEVNDLSASQNWGARHGSVLCISSLLKHNPSTIMTSSLFS 2283
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/99 (26%), Positives = 44/99 (44%)
Frame = -1
Query: 395 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP 216
+D P +D Q+A + P K EE+++D + WV EL VI +
Sbjct: 162 LDDPFDDPP-QLAEMMPDASPEGKPKEEVKDDVRLED-DWVPMDEELGAQELEEVIREKA 219
Query: 215 IEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVEN 99
+ LE + D+P V P+++ V +NP+ E+
Sbjct: 220 AHSSAVVLES--IGDIPEAEVKPPDNVLFVCKLNPVTED 256
>At5g45830.1 68418.m05637 expressed protein low similarity to
tumor-related protein [Nicotiana glauca x Nicotiana
langsdorffii] GI:688423
Length = 291
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = -1
Query: 374 ADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPED 195
A + V V I+DE + T + + I E++ G V+VD ++ Q E
Sbjct: 147 AKINVLHVKIIDEEEKMTKKVSSLQEDAADIPIATVAYEMENVGEPNVVVDQALDKQEEA 206
Query: 194 LEK--AQLVDLPVENVAEPED-LSPVQ 123
+ + + +L V+ +A+ LSPVQ
Sbjct: 207 MARLLVEADNLRVDTLAKILGILSPVQ 233
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = -1
Query: 350 NIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVD 171
N V P+ E +ND S+S + + D+DG G + DL +AQ + ++ +D
Sbjct: 1315 NDVTGPI--AGNETDNDD---SVSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMD 1369
Query: 170 L---PVENVAEPEDLSPVQVVNPIVENSQSEYPGKRYPD 63
+ EP +S V+ EN +E + P+
Sbjct: 1370 YEENSEDETNEPSSISGVEDPEMDSENEDTEVSKEDTPE 1408
>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 897
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 417 ISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYE 527
+S++ +WS+D + E+ + +DIG + + VFYE
Sbjct: 73 LSKNYASSSWSLDELLEILKCKEDIGQI--VMTVFYE 107
>At1g20060.1 68414.m02511 kinesin motor protein-related
Length = 951
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = -1
Query: 671 LSENVDNVAIFDIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFV--ENLDAPV- 501
LS+NV + + + +N P SVN ENV P A+ F +N D P
Sbjct: 724 LSKNVKDAELVPCHLSSENDAEPRQSVNSEENVGIPSTITHVEAEVTDFQRDQNQDDPTP 783
Query: 500 --EDADVLADSVN 468
E +V D +N
Sbjct: 784 SPEQVEVSQDCIN 796
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = +2
Query: 413 QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFLRSL 592
Q Q PQL H+ + Q Q Q + + L QSQ HSQ +L+ + L
Sbjct: 402 QQQQQLSSPQL-HQSSMSLNQQQISQIIQQQQQQSQLG--QSQMNQSHSQQQLQQMQQQL 458
Query: 593 QNQQGNRRCQREFQCQKSQ 649
Q Q + Q++ Q Q+ Q
Sbjct: 459 QQQPQQQMQQQQQQQQQMQ 477
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = +2
Query: 413 QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHSQLELRHFLRSL 592
Q Q PQL H+ + Q Q Q + + L QSQ HSQ +L+ + L
Sbjct: 402 QQQQQLSSPQL-HQSSMSLNQQQISQIIQQQQQQSQLG--QSQMNQSHSQQQLQQMQQQL 458
Query: 593 QNQQGNRRCQREFQCQKSQ 649
Q Q + Q++ Q Q+ Q
Sbjct: 459 QQQPQQQMQQQQQQQQQMQ 477
>At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low
similarity to coproporphyrinogen III oxidase from
Geobacillus stearothermophilus [GI:2104798]; contains
Pfam profile PF04055: radical SAM domain protein
Length = 484
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 390 IDVVYEADRISRDIGVLNWSIDVV 461
+ VYEA ++ GV NWS+D++
Sbjct: 210 VSQVYEAIEFVKECGVENWSMDLI 233
>At5g52860.1 68418.m06561 ABC transporter family protein
Length = 589
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 604 GKSTLSTGISMSKIATLSTFSLNSIPAKASS*MTSSGMMYIPSVDAF 744
GKSTL ++ T + LNSIP SS S Y+P D+F
Sbjct: 67 GKSTLLDILASKTSPTSGSILLNSIPINPSSYRKISS--YVPQHDSF 111
>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
Length = 792
Score = 27.5 bits (58), Expect = 10.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 308 ENDSEVGSISWVEYPAE 258
+ND +GSI W+ YP E
Sbjct: 560 KNDPRIGSIIWIGYPGE 576
>At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein
beta-xylosidase, Hypocrea jecorina, EMBL:Z69257
Length = 773
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 308 ENDSEVGSISWVEYPAELDEDGNGLVIVDL 219
+ND ++ SI WV YP E GL I D+
Sbjct: 546 KNDKKITSIMWVGYPGE----AGGLAIADV 571
>At3g16800.2 68416.m02145 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase-2C GB:AAC36699
from [Mesembryanthemum crystallinum]
Length = 351
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 263 AELDEDGNGLVIVDLPIEAQPEDLEKAQLV 174
A +DGNGLV V L ++ +P E+A+ +
Sbjct: 196 ATTSDDGNGLVPVQLSVDFKPNIPEEAERI 225
>At3g16800.1 68416.m02146 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase-2C GB:AAC36699
from [Mesembryanthemum crystallinum]
Length = 351
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 263 AELDEDGNGLVIVDLPIEAQPEDLEKAQLV 174
A +DGNGLV V L ++ +P E+A+ +
Sbjct: 196 ATTSDDGNGLVPVQLSVDFKPNIPEEAERI 225
>At2g36420.1 68415.m04471 expressed protein
Length = 439
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 206 QPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQSEYPGKRYPD 63
+ E LEK + + + + E SPV V++P+ E + E + PD
Sbjct: 227 ETESLEKVRGQEEEDKEEEDKEQCSPVSVLDPLEEEEEDEDHHQHEPD 274
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 27.5 bits (58), Expect = 10.0
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = -1
Query: 632 EIPVDNVDFPVDSVNFVENVEAP-VENADFPADSVSFVENLDAPVEDA-DVLADSVN 468
++ +D+ FPVD +N V ++ +P + + DF +D +E D ++D D L DS++
Sbjct: 3 DVQIDDT-FPVD-LNGVTSLCSPEIPSFDFVSDETEKLEIGDTSIDDCDDALGDSMD 57
>At2g09910.1 68415.m01029 hypothetical protein
Length = 985
Score = 27.5 bits (58), Expect = 10.0
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = -1
Query: 335 PVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLEKAQLVDLPVEN 156
P+E+ ++ ++ + P+ +D+ + V D + LE A +V P +
Sbjct: 318 PIEEETHPLDGEAATSNPPVSAGPSGVDQVSHETVNPDSQDRTR---LEGADVV--PAQE 372
Query: 155 VAEPEDLSPVQVVNPIVENSQSE 87
+AE + VQVV P ++N S+
Sbjct: 373 IAECDQSQSVQVVEPEIQNVTSD 395
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 27.5 bits (58), Expect = 10.0
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Frame = -1
Query: 599 DSVNFVENVEAPVENADFPADSVSFVENLDAPVEDADVLADSVNFXXXXXXXXXXXXXXX 420
++ F E + E D ++V N+ + V D + LA ++
Sbjct: 566 EAEEFAEEDKIMKEKIDARNKLETYVYNMKSTVADKEKLAKKIS---DEDKEKMEGVLKE 622
Query: 419 XXXSFVDNVDAPVEDADLQVAPVNIVDEPV-----EKTNEEIENDSEVGSISW 276
+NV+A ED D ++ V +V +PV EKT E E+ E+ ++S+
Sbjct: 623 ALEWLEENVNAEKEDYDEKLKEVELVCDPVIKSVYEKTEGENEDTMEMITMSY 675
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,152
Number of Sequences: 28952
Number of extensions: 298286
Number of successful extensions: 1180
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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