Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k14f
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    32   0.29 
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    29   2.0  
AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC006790-1|AAY55890.1|  309|Caenorhabditis elegans Hypothetical ...    28   4.6  
AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical ...    28   6.1  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    28   6.1  
AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical ...    28   6.1  

>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
 Frame = +2

Query: 176 QELALAGIELSENVDNVAIFDIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSV---- 343
           +E A+A +E SEN D + + D  IP ++V    ++   +EN+E  +++++  A++     
Sbjct: 17  EEHAVAPVEDSENPDVIQLDDDVIPEEDVPDDEETAENLENLENVLDDSEIIAENSGEAD 76

Query: 344 SFVENLDAPVEDAD 385
             VE  D P  D D
Sbjct: 77  QEVEEEDNPFADDD 90


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -3

Query: 497 PQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRH 318
           PQ+   R  +    QP    PQ +H+R   ++  Q     PQ + R  +   Q+Q   R 
Sbjct: 524 PQMSQMRMQQQQPQQPNMNSPQSQHQRAPNNMNMQQNLPNPQQQMR--IPQAQNQMQQRI 581

Query: 317 SQLELRHF-LRSLQNQQG 267
            Q+  +   ++  QN  G
Sbjct: 582 PQVSPQQMQMQQQQNMNG 599


>AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical
           protein ZC178.1 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 32/118 (27%), Positives = 51/118 (43%)
 Frame = -1

Query: 505 IGVLNWSIDVVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSRE 326
           IGV+   +D V     +   IGVL   +D V  V  +   IGV+   ++       V   
Sbjct: 427 IGVVLEELDSVELVMSVEYTIGVLLEELDSVELVMSVEDTIGVVLEELDSVELVMSVEYT 486

Query: 325 IGILNWSFDIFYEVYRINREIDVVNGNFNVKNRNVVYIFAQFNPGQGEFLNDFVGDDV 152
           IG+L    D    V  +   I VV G    +N +VV    +  P    F+++ +G++V
Sbjct: 487 IGVLLEELDSVELVMPVVDTIGVVTG-LGTENCDVVENSFEVLPDLWFFMSN-MGENV 542



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/89 (25%), Positives = 35/89 (39%)
 Frame = -1

Query: 505 IGVLNWSIDVVYEADRISRDIGVLNWSIDVVYEVYRISQDIGVLNWSIEVFYEAYRVSRE 326
           IGV+   +D V     +   IGV+   +D V  V  +   IGV+   ++       V   
Sbjct: 187 IGVVLEELDSVELVRSVEDTIGVVLEELDSVELVMSVEDTIGVVREKLDSVELVMSVEDT 246

Query: 325 IGILNWSFDIFYEVYRINREIDVVNGNFN 239
           IG++    D    V  +   I VV    N
Sbjct: 247 IGVVREKLDSVELVMSVEDTIGVVLEELN 275


>AC006790-1|AAY55890.1|  309|Caenorhabditis elegans Hypothetical
           protein Y49F6B.13 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 289 EVYRINREIDVVNGNFNVKNRNVVYIFAQFNPG--QGEFLN 173
           +V+R+ + I   NGN N+    ++     F+PG  +G F+N
Sbjct: 212 DVFRVLKFISPQNGNSNIDASKLIQQLTGFSPGFREGHFVN 252


>AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical
           protein Y105E8B.3 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 236 DIEIPVDNVDFPVDSVNFVENVEAPVENADFPADSVSFVENLDAPV 373
           DIE+P ++   P DS N  EN E   E  +  AD    VE   A V
Sbjct: 415 DIELPPEDFKRPADSENDDENDEDEEEGEEEDADGHVAVEEQVAKV 460


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
           protein Y46G5A.6 protein.
          Length = 1002

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 479 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAEL 619
           +D P  D+++ +A  N+    VEK+ E+++     G     +  AEL
Sbjct: 858 LDEPPSDSEVYIAKTNLAPVRVEKSAEKVKKSRNSGQKLSTDSSAEL 904


>AL032626-1|CAA21538.1|  183|Caenorhabditis elegans Hypothetical
           protein Y37D8A.1 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = -3

Query: 476 CLRS*QNQPGHRRPQLE-HRRCLRSLQNQPGHRRPQLEHRGF-LRSLQSQPGNRHSQLEL 303
           CLR  Q  P     Q + H   L  L   PG         GF L S+   P ++  + E+
Sbjct: 80  CLRKLQKSPNKIAGQKDLHALALSHLLPIPGEN-------GFPLNSMYKAPQSKPDEDEM 132

Query: 302 RHFLRSLQNQQGNRRCQREF 243
           R +L+ ++ + G R C   F
Sbjct: 133 RAYLQQIRQEIGARLCDLAF 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,519
Number of Sequences: 27780
Number of extensions: 278233
Number of successful extensions: 1179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)