Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k13r
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    48   1e-06
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    38   0.002
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    32   0.078
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    31   0.24 
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    29   0.73 
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   6.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   6.8  

>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
 Frame = -2

Query: 668 HGDHSS-HNMGMSMTFHGGYIET-ILFSWWNVTEXGEFVGSFFAIFIIALLYEGLKYYRK 495
           HG +S+  +  M MTF+  Y    I+F  W++    +F+ S  AI I+  L+E L+    
Sbjct: 3   HGGNSTMRHCSMKMTFNTDYDNLCIVFKSWHIGNLSQFLLSLLAIAILGYLFERLR---- 58

Query: 494 HLLWKTYAGLQYCAVAPPDKGVANICAADEPQIVQPIPHMLERNVPTMMSTAHAWQTILH 315
                ++  L+        +G A           Q    +L  +  ++ S        L+
Sbjct: 59  -----SFTSLKETEF---QRGYAG----------QQSEGLLTHHSKSLKSGRPFRLCALY 100

Query: 314 GVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGY 216
            VQ++ SY LMLV MTYN ++  A+ +G+A GY
Sbjct: 101 AVQLVFSYFLMLVAMTYNAYVILAIAIGAAFGY 133


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -2

Query: 338 HAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLFG 204
           H  ++  + VQ +V+Y+ ML+ M YN ++   +  G+  GYFLFG
Sbjct: 205 HFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFG 249


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   YIFLLYNWYKSFNSTSYNLSSYNMDFY 87
           Y  +L  WY  FN T   L S+NMD+Y
Sbjct: 230 YTGILERWYVLFNITMLRLVSFNMDYY 256


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
 Frame = -2

Query: 449 APPDKGVANICAADEPQIVQPIPHMLER--NVPTMMSTAH-AWQTILHGVQV-LVSYMLM 282
           APP+ G  N  + +E +I++P      R   + T ++  H  W++  H  ++   S    
Sbjct: 31  APPNDGEQNETSMEEMEIIEPPSEDSSRFPLLRTKLAAIHEGWESACHSFEIRFASTFHR 90

Query: 281 LVF-MTYNTWLCAAVVLGSATGYF--LFGWR------ESVVVDFTEHC 165
           + F   Y   +   ++L S  GYF  +  WR      E V++++ + C
Sbjct: 91  IPFQFLYLAVIATVIILASYYGYFDGVPAWRSVHHYGEDVLLNYIKGC 138


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -2

Query: 698 MITMSTLFSGHGDHSSH-NMGMSMTFHGGYIETILF--SWWNVTEXGEFVGSFFAIFIIA 528
           M  MS +  G   +SS     MSM ++  YI    F    W++    +F GS   IF  A
Sbjct: 8   MSGMSGMGMGSSSNSSAATCRMSMLWNW-YIHDSCFLAKSWHINTGNKFAGSIIGIFFFA 66

Query: 527 LLYEGLKYYRK 495
           +  EGL   ++
Sbjct: 67  VAIEGLSLVQR 77



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -2

Query: 347 STAHA--WQTILHGVQVLVSYM----LMLVFMTYNTWLCAAVVLGSATGYFLF 207
           ST H   WQ ++        Y+    LML+ M++N +      +G+  G+FLF
Sbjct: 103 STVHVTVWQQLIRAAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFLF 155


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 147 EHFSSVTMFSEVNNYRFAPTKE 212
           EH S    F  VN+YR  P +E
Sbjct: 388 EHISIAKSFGRVNDYRIVPDQE 409


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 393  YNLWFICCTNIGNSLVWW 446
            Y ++ +C   IG S VWW
Sbjct: 2017 YEIYSVCAFFIGASFVWW 2034


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,096
Number of Sequences: 5004
Number of extensions: 71885
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)