Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k13r
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0273 + 16292553-16293002                                         58   6e-09
08_02_0896 + 22355097-22355627                                         50   3e-06
05_04_0365 + 20659846-20660301                                         40   0.002
01_06_0859 + 32519587-32520039                                         36   0.027
01_06_0858 + 32516641-32517105                                         35   0.082
04_03_0802 - 19830614-19831275,19831426-19831507                       29   4.1  
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667     28   7.1  

>09_04_0273 + 16292553-16293002
          Length = 149

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 45/144 (31%), Positives = 69/144 (47%)
 Frame = -2

Query: 638 MSMTFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGLKYYRKHLLWKTYAGLQY 459
           M MTF+ G   TILF  W       ++ S  A+ + +  Y+ L+ +R  +  K  AG + 
Sbjct: 2   MHMTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRV--KLLAGAKP 59

Query: 458 CAVAPPDKGVANICAADEPQIVQPIPHMLERNVPTMMSTAHAWQTILHGVQVLVSYMLML 279
            ++ PP    A+  AA  P +   +P       P  ++TA      L GV   + Y+LML
Sbjct: 60  ASIPPP----ASSDAARAPLL---LPSSAAGRWPARLATAG-----LFGVNSGLGYLLML 107

Query: 278 VFMTYNTWLCAAVVLGSATGYFLF 207
             M++N  +  AVV+G A GY  F
Sbjct: 108 AVMSFNGGVFVAVVVGLAAGYLAF 131


>08_02_0896 + 22355097-22355627
          Length = 176

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
 Frame = -2

Query: 638 MSMTFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGLKYYRKHL-LWKTYAGLQ 462
           M M+F+ G   TILF  W  +    ++ S  A+F+ A LY+ L+  R  L   + +    
Sbjct: 2   MHMSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRLRAGRRHRAGG 61

Query: 461 YCAVAPPDKGVANICAADEPQIVQPIPHML-------ERNVPTMMSTAHAWQTILHGVQV 303
               A    G     A+D   ++      L        R +    + A A    L G+  
Sbjct: 62  GGGAASSAAGPVVPAASDARALLSAAGGRLGLGLGLGRRWMKEPRAAASAAAAALFGLSA 121

Query: 302 LVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 207
            V Y+LML  M++N  +  AVV G A G+  F
Sbjct: 122 AVGYLLMLAVMSFNGGVFLAVVAGLAAGHLAF 153


>05_04_0365 + 20659846-20660301
          Length = 151

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = -2

Query: 341 AHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 207
           A A +T +H V+V V+Y++ML  M++N  +  A+V G A G+  F
Sbjct: 83  AAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127


>01_06_0859 + 32519587-32520039
          Length = 150

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 320 LHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 207
           +H V+V ++Y+LML  M++N  +  A V G A G+  F
Sbjct: 93  VHAVRVGLAYLLMLALMSFNVGVLLAAVAGHAAGFLAF 130



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 638 MSMTFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGL 510
           M MTF+ G    ILF+ W     G +  +  A+F +A+L E L
Sbjct: 28  MHMTFYWGKNSEILFTGWPGASGGMYALALAAVFALAVLLEFL 70


>01_06_0858 + 32516641-32517105
          Length = 154

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 374 LERNVPTMMSTAHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 207
           L R  P     A A    +H V+V V+Y+LML  M++N  +    V G A G+  F
Sbjct: 80  LARRAPAAGGLARA---AVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 132



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 632 MTFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGL 510
           MTF  G    +LF+ W  T  G +  +   +F +A++ E L
Sbjct: 28  MTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFL 68


>04_03_0802 - 19830614-19831275,19831426-19831507
          Length = 247

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 312 PMKYRLPCVCCAHHRR 359
           P+ Y +PC CC H RR
Sbjct: 137 PVPYPVPCKCCPHRRR 152


>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
          Length = 569

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 371 QAYEELAVQFVVHLLHKYWQLPCLVVLRHNTVVLHMSS 484
           QA+++  ++  + + H+  Q PC VVL    +V H SS
Sbjct: 463 QAFQQREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSS 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,151,552
Number of Sequences: 37544
Number of extensions: 442758
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)