Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k13r
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      33   0.25 
SB_6623| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.33 
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             29   3.1  
SB_34603| Best HMM Match : DUF1211 (HMM E-Value=3.3)                   29   3.1  
SB_35884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   5.9  
SB_50535| Best HMM Match : PPE (HMM E-Value=1.1)                       28   9.5  
SB_51848| Best HMM Match : DUF1135 (HMM E-Value=6.4e-09)               28   9.5  

>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 578 TEXGEFVGSFFAIFIIALLYEGLKYYRKHL 489
           T     +GS  A+FI+A+LYEGLK  R+ L
Sbjct: 122 TSTPGMIGSCIAVFILAVLYEGLKVSREML 151


>SB_6623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 162 VTMFSEVNNYRFAPTKEEVPCR*S*YYSSAQPCVVSHKNQHQHIT 296
           + +F  V+N    P+KE+VP   +     AQP ++ H+++HQ +T
Sbjct: 47  MAVFINVHNLGKFPSKEKVPEASTQRNCYAQPTIIRHEDKHQKVT 91


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 326  TILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 207
            T +  V V+VS + + +   Y TWL   V  GS   +FLF
Sbjct: 1349 TFVFAVCVIVSNLKLALVTHYWTWLTHVVTWGSILTFFLF 1388


>SB_34603| Best HMM Match : DUF1211 (HMM E-Value=3.3)
          Length = 143

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 326 TILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 207
           T +  V V+VS + + +   Y TWL   V  GS   +FLF
Sbjct: 33  TFVFAVCVIVSNLKLALVTHYWTWLTHVVTWGSILTFFLF 72


>SB_35884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = +3

Query: 255 PCVVSHKNQHQHITN*HLNPMKYRLPCVCCAHHRRNISFKHMRNWLYNLWFIC 413
           P +V   N H+ ++  H  P+       C  H R  I   + ++    L ++C
Sbjct: 22  PLLVRSSNTHRRVSRIHSEPLLIESSTRCAVHQRNTIRQANRQHTALRLKYLC 74


>SB_25814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 365 NVPTMMSTAHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLFG--WRES 192
           N+  M ST    + I H V   V+Y L+ + + Y   +  +++      YFL    W E 
Sbjct: 204 NISNMSSTQVTQEAIEHRVAATVAYSLVALAICYIPIIVVSILRSLGNNYFLLTAIWMEM 263

Query: 191 VVV 183
           +++
Sbjct: 264 LLL 266


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 23.8 bits (49), Expect(2) = 5.9
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 368 RNVP---TMMSTAHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLG 231
           +N+P   T   T H WQ++L  + +   Y    V+ T    L   +V G
Sbjct: 286 KNIPLIATRSITTHLWQSLLRAILLAFKYFYG-VYTTSRDCLWRRIVYG 333



 Score = 23.0 bits (47), Expect(2) = 5.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 443 PDKGVANICAADEPQIVQPIPHMLERNV 360
           P  G  ++C A    +VQP  H L + +
Sbjct: 235 PSVGRFSVCVAQSQIVVQPKHHELTKRI 262


>SB_50535| Best HMM Match : PPE (HMM E-Value=1.1)
          Length = 299

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 90  LSSIRNKVFTTNTNHHYNCEHFSSVTMFSEVNNYRFAPTKEEVPC 224
           L S+ N +  T   H YN    +   +  + N YRFA    + PC
Sbjct: 87  LKSVVNNM--TTVQHGYNLRSGNEKIIGPQANTYRFARVVHKAPC 129


>SB_51848| Best HMM Match : DUF1135 (HMM E-Value=6.4e-09)
          Length = 498

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 383 ELAVQFVVHLLHKYWQLPCLV 445
           +L + F+ HLLH  +Q+PC +
Sbjct: 272 QLLIVFIKHLLHDRFQVPCTI 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,039,825
Number of Sequences: 59808
Number of extensions: 545278
Number of successful extensions: 1218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)