Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k13r
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20650.1 68418.m02453 copper transporter family protein simil... 53 2e-07
At2g26975.1 68415.m03236 copper transporter, putative similar to... 37 0.013
At3g46900.1 68416.m05090 copper transporter, putative similar to... 36 0.022
At5g59040.1 68418.m07397 copper transporter family protein simil... 36 0.030
At5g59030.1 68418.m07395 copper transporter 1 (COPT1) nearly ide... 36 0.039
At2g37925.1 68415.m04655 copper transporter family protein simil... 30 1.5
At4g11390.1 68417.m01837 DC1 domain-containing protein contains ... 29 4.5
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 29 4.5
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ... 28 5.9
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ... 28 5.9
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ... 28 7.8
>At5g20650.1 68418.m02453 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 146
Score = 52.8 bits (121), Expect = 2e-07
Identities = 39/144 (27%), Positives = 66/144 (45%)
Frame = -2
Query: 638 MSMTFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGLKYYRKHLLWKTYAGLQY 459
M MTF+ G TILF +W ++ + A F+ + Y+ L+ + + +K+ + +
Sbjct: 2 MHMTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLE--NRRIQFKSLSSSR- 58
Query: 458 CAVAPPDKGVANICAADEPQIVQPIPHMLERNVPTMMSTAHAWQTILHGVQVLVSYMLML 279
PP + + + A IP R S A A +L GV + Y+LML
Sbjct: 59 -RAPPPPRSSSGVSAP-------LIPKSGTR------SAAKAASVLLFGVNAAIGYLLML 104
Query: 278 VFMTYNTWLCAAVVLGSATGYFLF 207
M++N + A+V+G GY +F
Sbjct: 105 AAMSFNGGVFIAIVVGLTAGYAVF 128
>At2g26975.1 68415.m03236 copper transporter, putative similar to
SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 145
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 662 DHSSHNM-GMSMTFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGLKY 504
+H++ NM M MTF G ILFS W T G +V +F++A++ E L +
Sbjct: 16 NHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAH 69
>At3g46900.1 68416.m05090 copper transporter, putative similar to
SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 158
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 674 SGHGDHSS-HNMGMSMTFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGLKY 504
S +H++ H M M MTF G +LFS W T G + IF++A++ E L +
Sbjct: 17 SSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAH 74
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -2
Query: 329 QTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLFG 204
QT ++ ++ +SY++ML M++N + + G G+FLFG
Sbjct: 92 QTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFG 133
>At5g59040.1 68418.m07397 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 151
Score = 35.9 bits (79), Expect = 0.030
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -2
Query: 329 QTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLFGWR 198
QT ++ V+ +SY++ML M++N + A + G G+ +FG R
Sbjct: 91 QTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSR 134
>At5g59030.1 68418.m07395 copper transporter 1 (COPT1) nearly
identical to SP|Q39065 Copper transporter 1 (COPT1)
{Arabidopsis thaliana}
Length = 170
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 665 GDHSSHNMGMSMTFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGLKY 504
G H M M MTF G +LFS W T G + +F +A+L E L +
Sbjct: 33 GGHHHMKMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAH 86
>At2g37925.1 68415.m04655 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family; supporting cDNA
gi|18496855|gb|AF466372.1|
Length = 145
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 629 TFHGGYIETILFSWWNVTEXGEFVGSFFAIFIIALLYEGL 510
TF+ GY +LFS W ++ G + + +F +A L E L
Sbjct: 33 TFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWL 72
>At4g11390.1 68417.m01837 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 514
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 370 SSI*GIGCTICGSSAAQILATPLSGGATAQYCSPAYVFHSKC 495
+S+ G+ ++CG ++ T GG + Q C P YV HSKC
Sbjct: 77 TSVLGVVNSVCGVCHQKVDWT--WGGYSCQRC-PQYVIHSKC 115
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 255 PCVVSHKNQHQHITN*HLNPMKYRLPCVCC 344
P +SH H+HI L P++ LPC C
Sbjct: 197 PTTISHLKSHEHILT--LFPIRLPLPCGAC 224
>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 668
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 370 SSI*GIGCTICGSSAAQILATPLSGGATAQYCSPAYVFHSKC 495
+S+ G+ ++CG ++ T GG + Q C P YV HSKC
Sbjct: 302 TSVLGVVNSVCGVCRRKVDWT--WGGYSCQRC-PHYVVHSKC 340
>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 525
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 370 SSI*GIGCTICGSSAAQILATPLSGGATAQYCSPAYVFHSKC 495
+S+ G+ ++CG ++ T GG + Q C P YV HSKC
Sbjct: 214 TSVLGVVNSVCGVCHQKVDWT--WGGYSCQRC-PQYVVHSKC 252
>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 370 SSI*GIGCTICGSSAAQILATPLSGGATAQYCSPAYVFHSKC 495
+S+ G+ ++CG ++ + GG + Q CS +YVFH+KC
Sbjct: 309 TSLIGVVNSVCGICRKKMDWS--CGGYSCQKCS-SYVFHTKC 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,278
Number of Sequences: 28952
Number of extensions: 365391
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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