Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k13f
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0896 + 22355097-22355627 36 0.026
09_04_0273 + 16292553-16293002 31 0.97
01_06_0859 + 32519587-32520039 31 0.97
10_08_0861 - 21139173-21139613 30 1.3
04_03_0119 + 11485753-11486202 29 3.0
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 29 3.9
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 28 6.9
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 6.9
08_02_0707 - 20212190-20214592 27 9.1
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 27 9.1
01_06_0858 + 32516641-32517105 27 9.1
>08_02_0896 + 22355097-22355627
Length = 176
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHL 581
M M+F+ G TILF W + ++ S A+F+ A LY+ L+ R L
Sbjct: 2 MHMSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRL 51
>09_04_0273 + 16292553-16293002
Length = 149
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYR 572
M MTF+ G TILF W ++ S A+ + + Y+ L+ +R
Sbjct: 2 MHMTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFR 48
>01_06_0859 + 32519587-32520039
Length = 150
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGL 560
M MTF+ G ILF+ W G + + A+F +A+L E L
Sbjct: 28 MHMTFYWGKNSEILFTGWPGASGGMYALALAAVFALAVLLEFL 70
>10_08_0861 - 21139173-21139613
Length = 146
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 276 GVHAQHGPYPYCG-VHDVRPSSTGLRRCTAIKPKKLSTFVNINLNCELR 133
GV+ HGPY C + + + + CTA+K L VN+N+ EL+
Sbjct: 84 GVNVGHGPYDCCPLLAGLADADAAVCLCTAVKANVLG--VNLNVPVELK 130
>04_03_0119 + 11485753-11486202
Length = 149
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 270 HAQHGPYPYCGVHDVRPSSTGLRRCTAIKP 181
H++ G YP+C P S+ CTA+ P
Sbjct: 66 HSRGGMYPWCSSPASPPPSSATSTCTALSP 95
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Frame = -1
Query: 444 TSWTCPYCGYC-------DHHGLKKCGHCDHSYLCCAQ 352
+SW CP C C D + L C CD +Y C Q
Sbjct: 183 SSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQ 220
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 525 QKMIPQIHQLLLRSTKRRE*FQCSHRETSWTCPYCGYCDHHGLKKCG 385
Q ++ + + L++ KR + CS+ W PYC D G CG
Sbjct: 430 QSLVDTLDKALVKYKKRIQHAPCSNTFRVWCHPYCSRQD-PGTSTCG 475
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 306 GLYVLNDQSHGVHAQHGPYPYCGVHDVRPSSTGLRRCTAIK 184
GL + ++S+ V A GP P ++PSS L T ++
Sbjct: 822 GLEMSTNESNCVRASSGPVPVLETRSIKPSSLSLAIYTLVQ 862
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRHIGHQM----PINGLLNSSYNRIVHNTDMNDHNVHTFSGH----GD 410
GH H HH DHS H HQ + N S + + +N + H H G
Sbjct: 582 GHDHHHHHHHDHSEH--HQQSGDHAHQDISNISSDPAILEIPLNSIHTHCSEAHSCNGGL 639
Query: 411 HSSHNMGMSMTFH 449
SS N S H
Sbjct: 640 QSSENHNKSRNRH 652
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +3
Query: 276 HGIDHSRH---IGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGMSMTF 446
HG H R I Q + G ++SS N HN +N N G+H + S +
Sbjct: 471 HGSAHGRTPSTIMRQESLTGKVSSSSNNEKHNRSINMENRPPTVNFGEH--RKLQESASV 528
Query: 447 HGGYIETIL 473
HG T++
Sbjct: 529 HGRIPSTVM 537
>01_06_0858 + 32516641-32517105
Length = 154
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 438 MTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGL 560
MTF G +LF+ W T G + + +F +A++ E L
Sbjct: 28 MTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFL 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,372
Number of Sequences: 37544
Number of extensions: 363894
Number of successful extensions: 866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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