Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k13f
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8) 36 0.035
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 33 0.19
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 33 0.19
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2) 29 2.3
SB_18253| Best HMM Match : ADAM_spacer1 (HMM E-Value=4e-05) 28 5.3
SB_11553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
Length = 476
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 264 GHEHHGIDHSRHI-GHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGD 410
GH H DH+ H+ G + G SY+ HN + DHN H + H D
Sbjct: 363 GHSDHVTDHNDHVTGRSDHVTG---HSYHVTGHNDYLTDHNDHVTTDHSD 409
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRHIGHQMPINGLLNSSYNRI-VHNTDMNDHNVHTFSGHGDHSSHN 425
GH+ HE+HG H H GH +G + ++ H+ +D++ H+ HG H+
Sbjct: 314 GHS-HENHGHSHENH-GHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 492 TEVGEFVGSFFAIFIIALLYEGLKYYRKHL 581
T +GS A+FI+A+LYEGLK R+ L
Sbjct: 122 TSTPGMIGSCIAVFILAVLYEGLKVSREML 151
>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 31.1 bits (67), Expect = 0.75
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 333 NSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVGEFV 512
N++ + +HNT HN + + + HN S T H TI +WW +T F
Sbjct: 94 NTTRHNSLHNTTR--HNSLPNTTRHNTTRHNSLNSTTMHNSLPNTIRTTWWPITFFSSFS 151
Query: 513 GSF-FAIFIIALLYEGLKYYRK 575
+ +A + L++YRK
Sbjct: 152 FMWNWAKLTTWSVGTDLRFYRK 173
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 399 LKKCGHC-DHSYLCCAQFCYMMN*EVH**AFGGLYVLNDQSHGVHAQHG 256
L+ C +C SYLCCA C + + GG+ + S G H G
Sbjct: 771 LRPCAYCLTDSYLCCASVCAYVLVRTNLNTHGGMGMSGGGSMGAHGGGG 819
>SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 261 AGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNV-HTFSGHGDHSSHNMGMS 437
AG + G D G M +NG +N++Y+ + D +D+N+ + +GD + + +
Sbjct: 151 AGDDDDGGDDDDGGGGAMMLNGDINANYDAYGDDDDNDDNNLDDDYGTYGDDNDDDDNLD 210
Query: 438 MTFHGGYIE 464
++ Y +
Sbjct: 211 DVYYDAYCD 219
>SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)
Length = 213
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 303 GHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGMSMTF 446
G + +N NS+ R N D+ND H GH + G+S +F
Sbjct: 17 GMNIKVNAFKNSNSIRGNMNGDLNDEFQHGGDGHSHADATRFGLSWSF 64
>SB_18253| Best HMM Match : ADAM_spacer1 (HMM E-Value=4e-05)
Length = 339
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 300 YVLNDQSHGVHAQHGPYPYCGVHDVRPSSTGL 205
+VL D G+ A HGPYP C + D+ +T +
Sbjct: 110 HVLRDT--GLDAGHGPYPGCKMFDLPAGATNV 139
>SB_11553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 276 HGIDHSRHIGHQMPI-NGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGMS 437
H D SRH NG+ + H+ DM+ H+ D S HN GMS
Sbjct: 32 HDNDMSRHDNDMSRHDNGMSPHDNDMSPHDNDMSPHDNDMSPHDNDMSRHNNGMS 86
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGM 434
GH G +H G HS +G N SYN+ ++ D ++ + + S HG+ S++ G
Sbjct: 705 GHYGADHQGSYHS----DPNSFHGDQN-SYNQGSYHGDQDNRHDNQGSYHGNQESYH-GY 758
Query: 435 SMTFHG 452
+HG
Sbjct: 759 QDGYHG 764
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,316,863
Number of Sequences: 59808
Number of extensions: 434538
Number of successful extensions: 1000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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