Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k13f
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-7|AAB37655.1| 252|Caenorhabditis elegans Hypothetical pr... 61 5e-10
U80441-6|AAT68894.1| 256|Caenorhabditis elegans Hypothetical pr... 61 5e-10
U55856-1|AAA98020.1| 162|Caenorhabditis elegans Hypothetical pr... 48 7e-06
Z68217-2|CAA92470.2| 134|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AC006807-1|AAK84615.1| 130|Caenorhabditis elegans Hypothetical ... 38 0.004
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 38 0.008
Z68217-9|CAN86607.1| 142|Caenorhabditis elegans Hypothetical pr... 36 0.018
Z68217-8|CAI59117.1| 156|Caenorhabditis elegans Hypothetical pr... 36 0.018
Z68217-5|CAC70098.1| 166|Caenorhabditis elegans Hypothetical pr... 36 0.023
AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical ... 36 0.023
AF043701-4|ABP57821.1| 132|Caenorhabditis elegans Hypothetical ... 34 0.071
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 32 0.29
U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical pr... 25 2.0
U67953-3|AAL13328.1| 321|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H... 28 4.7
Z82260-14|CAB05142.2| 521|Caenorhabditis elegans Hypothetical p... 27 8.2
Z73104-10|CAA97437.2| 521|Caenorhabditis elegans Hypothetical p... 27 8.2
AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode poly... 27 8.2
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 27 8.2
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical... 27 8.2
AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode poly... 27 8.2
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 27 8.2
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 27 8.2
>U80441-7|AAB37655.1| 252|Caenorhabditis elegans Hypothetical
protein F27C1.2a protein.
Length = 252
Score = 61.3 bits (142), Expect = 5e-10
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +3
Query: 366 DMNDHNVHT----FSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIF 533
D N+H+ H+ +GHG H H M M FHGG+ E ILF +W + + S AIF
Sbjct: 52 DQNEHHEHSSHGSHAGHGGHEGHMM--KMWFHGGFEEVILFDFWRTDSLFGMLLSCAAIF 109
Query: 534 IIALLYEGLKYYRKHL 581
I+ YEG+K++R L
Sbjct: 110 IMGATYEGVKWFRVFL 125
>U80441-6|AAT68894.1| 256|Caenorhabditis elegans Hypothetical
protein F27C1.2b protein.
Length = 256
Score = 61.3 bits (142), Expect = 5e-10
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +3
Query: 366 DMNDHNVHT----FSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIF 533
D N+H+ H+ +GHG H H M M FHGG+ E ILF +W + + S AIF
Sbjct: 52 DQNEHHEHSSHGSHAGHGGHEGHMM--KMWFHGGFEEVILFDFWRTDSLFGMLLSCAAIF 109
Query: 534 IIALLYEGLKYYRKHL 581
I+ YEG+K++R L
Sbjct: 110 IMGATYEGVKWFRVFL 125
>U55856-1|AAA98020.1| 162|Caenorhabditis elegans Hypothetical
protein F31E8.4 protein.
Length = 162
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 426 MGMSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHL-LW 587
M M MT H G E ILFSWW + S F++ +LYE +K +R L +W
Sbjct: 1 MDMDMTLHFGEREKILFSWWKTGSLSGMAVSMLITFLLCILYEAIKSFRYFLAVW 55
>Z68217-2|CAA92470.2| 134|Caenorhabditis elegans Hypothetical
protein F58G6.3 protein.
Length = 134
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRK 575
M M FH +T+LFS WN+T G+ V + + I ++ E +KY R+
Sbjct: 16 MWMWFHTKPQDTVLFSTWNITSAGKMVWACILVAIAGIILEAIKYNRR 63
>U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical
protein F01G12.1 protein.
Length = 178
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Frame = +3
Query: 360 NTDMNDHNVHTFSGHGDHS--SHNMG-MSMTFHGGYIETILFSWWNVTE---VGEFVGSF 521
N +DH++H H H+ SH+ M M FH G+ E +LF +W + + + +G+
Sbjct: 91 NQSGHDHHIHNNEEHKHHNMRSHDHHTMKMWFHWGFDEVVLFDFWRIDDKNALAVILGAG 150
Query: 522 FAIFIIALLY 551
F +I A+L+
Sbjct: 151 FGHWIFAVLH 160
>AC006807-1|AAK84615.1| 130|Caenorhabditis elegans Hypothetical
protein Y58A7A.1 protein.
Length = 130
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 438 MTFHGGYIETILFSWWNV-TEVGEFVGSFFAIFIIALLYEGLKYYRKH 578
M+FH G ETILF +W T VG V F + ++A L E L+++R +
Sbjct: 1 MSFHFGTEETILFDFWKTETAVGIAVACFITV-LLAFLMETLRFFRDY 47
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +3
Query: 258 HAGHEHHGIDHSRHIGHQMPIN-GLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGM 434
H H HG H H H P + G ++ H+ H H HG H SH G
Sbjct: 539 HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH-HGHHESHGHGH 597
Query: 435 SMTFHGGY 458
H G+
Sbjct: 598 HAPAHHGH 605
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGM 434
GH G HH H H G +G ++ H+ +H H HG H SH+
Sbjct: 504 GHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTH----HGHHGSHHSPA 559
Query: 435 SMTFHG 452
HG
Sbjct: 560 HHGHHG 565
Score = 35.5 bits (78), Expect = 0.031
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +3
Query: 261 AGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSG--HGDHSSHNMGM 434
A H+ HG+ H H H +G +S + H T H H + HG H SH G
Sbjct: 394 AHHDEHGVHHRHHGEH----HGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGH 449
Query: 435 SMTFHGGY 458
H G+
Sbjct: 450 HSPAHHGH 457
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +3
Query: 258 HAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHG-DHSSHNMGM 434
H H HG+ H H +G + ++ H+ H H HG H H
Sbjct: 603 HGHHGEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHH 662
Query: 435 SMTFHG 452
S+ HG
Sbjct: 663 SLAHHG 668
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSG-HGDHSSHN 425
GH G HH H H G +G S ++ H H+ G HG+H +H+
Sbjct: 469 GHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHH 526
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSG-HGDHSSHNM 428
GH G HH H H G +G S ++ H H+ G HG H SH +
Sbjct: 527 GHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGV 585
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRH-----IGHQMPI-NGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHS 416
GH G HH H H GH P +G ++ H+ +H+ H + HG H
Sbjct: 427 GHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHH-HAPAHHGHHG 485
Query: 417 SHNMGMSMTFHGGY 458
H G HG +
Sbjct: 486 EH--GTHHGHHGSH 497
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGM 434
GH G HH H H H +G + + + H H++ HG H +H+
Sbjct: 625 GHHGAHHHHAPHHEHHEH----HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAH 680
Query: 435 SMTFHGGY 458
H G+
Sbjct: 681 HSPAHHGH 688
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = +3
Query: 264 GHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGMSMT 443
GH HH H H G +G + Y + + H+ H H H+ G
Sbjct: 594 GHGHHAPAHHGHHGEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSHGV 653
Query: 444 FHG 452
HG
Sbjct: 654 HHG 656
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +3
Query: 255 GHAGHEHHGIDHSRHIG--HQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNM 428
GH G HH H H G H P + + + H+ H H+ + HG H H+
Sbjct: 456 GHHGEHHHAPAHHGHHGEHHHAPAHHGHHGEHG--THHGHHGSH--HSPAHHGHHGEHHH 511
Query: 429 GMSMTFHGG 455
+ H G
Sbjct: 512 APAHHGHHG 520
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 258 HAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHN 425
H GH H H H GH +G + + H+ + H+ H +G+G H H+
Sbjct: 573 HHGHHGHHGSHGVHHGHH-ESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHHGHH 627
>Z68217-9|CAN86607.1| 142|Caenorhabditis elegans Hypothetical
protein F58G6.9b protein.
Length = 142
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYR 572
M M +H +T+LF W V + G V + F + +L E LKY R
Sbjct: 21 MWMWYHVDVEDTVLFKSWTVFDAGTMVWTCFVVAAAGILLEALKYAR 67
>Z68217-8|CAI59117.1| 156|Caenorhabditis elegans Hypothetical
protein F58G6.9a protein.
Length = 156
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYR 572
M M +H +T+LF W V + G V + F + +L E LKY R
Sbjct: 21 MWMWYHVDVEDTVLFKSWTVFDAGTMVWTCFVVAAAGILLEALKYAR 67
>Z68217-5|CAC70098.1| 166|Caenorhabditis elegans Hypothetical
protein F58G6.7 protein.
Length = 166
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +3
Query: 423 NMGMSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHL 581
+M M M FH E ILF W +V S IF+IA E LK+ R L
Sbjct: 3 HMMMEMYFHFRIEEPILFREWKPLNTTAYVFSCIEIFLIAFCLEALKFGRTKL 55
>AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical
protein K12C11.7 protein.
Length = 166
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHL 581
M M FH E ILF W T+ +V S ++F IA E LK+ R+ +
Sbjct: 6 MQMYFHFRIQEPILFRQWKPTDTTGYVFSCISLFFIAFCLELLKFGRQRM 55
>AF043701-4|ABP57821.1| 132|Caenorhabditis elegans Hypothetical
protein K12C11.6 protein.
Length = 132
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYR 572
M M FH +T+LF WNVT+ V I + +L E +K+ R
Sbjct: 9 MHMWFHTKTQDTVLFKTWNVTDTPTMVWVCCIIVVAGILLELIKFLR 55
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 432 CPYCGYCDHHGLKK-CGHCDHSYLCCAQFCYMMN*EVH 322
C +C C H G KK C C +Y C+Q C + +H
Sbjct: 318 CQFCSVCGHPGAKKRCTQCKLAY--CSQECQKFDWPIH 353
>U97015-9|AAB52349.1| 343|Caenorhabditis elegans Hypothetical
protein F48C1.8 protein.
Length = 343
Score = 25.4 bits (53), Expect(2) = 2.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 258 HAGHEHHGIDHSRH 299
H GH+H G DH H
Sbjct: 29 HGGHDHGGHDHGGH 42
Score = 22.6 bits (46), Expect(2) = 2.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 357 HNTDMNDHNVHTFSGHGDHSSHN 425
H+ +DH H G G H H+
Sbjct: 37 HDHGGHDHGGHDHGGWGGHDHHD 59
>U67953-3|AAL13328.1| 321|Caenorhabditis elegans Hypothetical
protein ZC13.2 protein.
Length = 321
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 432 CPYCGYCDH-HGLKKCGHCDHSYLCCAQ 352
C + Y D+ HG KKC C LCC +
Sbjct: 262 CGWVKYIDYMHGKKKCSICSLFSLCCGK 289
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 258 HAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMND--HNVHTFSGHGDHSSHNM 428
H H H+ D S H+ H + N H+T N+ H+ HT S H H++
Sbjct: 947 HHHHHHYHTDGSEHVHH-------YHQDENAHQHSTAENEHIHHYHTTSNENAHHHHSV 998
>Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical
protein K09C8.1 protein.
Length = 783
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 246 MDMGHAGHEHHGIDHSRHIGHQMPINGLLN--SSYNRIVHN 362
+D H GH HHG H + N L+ SS +++HN
Sbjct: 633 LDEEHQGHHHHGQVHPDNEDADQRANELIKDVSSIRQLMHN 673
>AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H
exchanger isoform 7 protein.
Length = 783
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 246 MDMGHAGHEHHGIDHSRHIGHQMPINGLLN--SSYNRIVHN 362
+D H GH HHG H + N L+ SS +++HN
Sbjct: 633 LDEEHQGHHHHGQVHPDNEDADQRANELIKDVSSIRQLMHN 673
>Z82260-14|CAB05142.2| 521|Caenorhabditis elegans Hypothetical
protein C32H11.1 protein.
Length = 521
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = -3
Query: 547 SKAIINIAKNDPTNSPTSVT 488
+K+I +I NDPTN+P++++
Sbjct: 463 TKSITDIPSNDPTNAPSAIS 482
>Z73104-10|CAA97437.2| 521|Caenorhabditis elegans Hypothetical
protein C32H11.1 protein.
Length = 521
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = -3
Query: 547 SKAIINIAKNDPTNSPTSVT 488
+K+I +I NDPTN+P++++
Sbjct: 463 TKSITDIPSNDPTNAPSAIS 482
>AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (51.7 kD) protein.
Length = 444
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 375 DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVG 503
DH H GHGDHS HN H IE + W + + G
Sbjct: 141 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEKYI-EWLDEIQKG 183
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 375 DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVG 503
DH H GHGDHS HN H IE + W + + G
Sbjct: 1137 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEKYI-EWLDEIQKG 1179
>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
protein Y43F8C.12 protein.
Length = 1119
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 394 FQAMVITVATIWACP*RFTVATLKLFSSLG 483
FQ + + W+CP + T A + LF +LG
Sbjct: 413 FQMITPQIQQFWSCPYQITFALVYLFITLG 442
>AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform b
protein.
Length = 399
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 375 DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVG 503
DH H GHGDHS HN H IE + W + + G
Sbjct: 96 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEKYI-EWLDEIQKG 138
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 375 DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVG 503
DH H GHGDHS HN H IE + W + + G
Sbjct: 895 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEKYI-EWLDEIQKG 937
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 375 DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVG 503
DH H GHGDHS HN H IE + W + + G
Sbjct: 1137 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEKYI-EWLDEIQKG 1179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,589
Number of Sequences: 27780
Number of extensions: 335552
Number of successful extensions: 924
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -