Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k13f
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26975.1 68415.m03236 copper transporter, putative similar to... 38 0.005
At5g59030.1 68418.m07395 copper transporter 1 (COPT1) nearly ide... 37 0.012
At3g46900.1 68416.m05090 copper transporter, putative similar to... 37 0.012
At5g20650.1 68418.m02453 copper transporter family protein simil... 33 0.20
At2g37925.1 68415.m04655 copper transporter family protein simil... 29 1.9
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 29 2.5
At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1... 28 4.3
At3g17750.1 68416.m02265 protein kinase family protein contains ... 28 4.3
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 28 4.3
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei... 28 4.3
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 28 5.7
At1g52650.1 68414.m05945 F-box family protein contains F-box dom... 28 5.7
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 27 7.6
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 27 7.6
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 27 7.6
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 27 7.6
>At2g26975.1 68415.m03236 copper transporter, putative similar to
SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 145
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 408 DHSSHNM-GMSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKY 566
+H++ NM M MTF G ILFS W T +G +V +F++A++ E L +
Sbjct: 16 NHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAH 69
>At5g59030.1 68418.m07395 copper transporter 1 (COPT1) nearly
identical to SP|Q39065 Copper transporter 1 (COPT1)
{Arabidopsis thaliana}
Length = 170
Score = 36.7 bits (81), Expect = 0.012
Identities = 28/95 (29%), Positives = 42/95 (44%)
Frame = +3
Query: 282 IDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYI 461
+DH G P + +SS + +++N MN+ G H M M MTF G
Sbjct: 1 MDHDHMHGMPRPSSSS-SSSPSSMMNNGSMNEG--------GGHHHMKMMMHMTFFWGKN 51
Query: 462 ETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKY 566
+LFS W T G + +F +A+L E L +
Sbjct: 52 TEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAH 86
>At3g46900.1 68416.m05090 copper transporter, putative similar to
SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 158
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +3
Query: 357 HNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFI 536
H DM + + S + H M M MTF G +LFS W T G + IF+
Sbjct: 5 HMHDMPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFL 64
Query: 537 IALLYEGLKY 566
+A++ E L +
Sbjct: 65 LAVIAEWLAH 74
>At5g20650.1 68418.m02453 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family
Length = 146
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 432 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYR 572
M MTF+ G TILF +W ++ + A F+ + Y+ L+ R
Sbjct: 2 MHMTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRR 48
>At2g37925.1 68415.m04655 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family; supporting cDNA
gi|18496855|gb|AF466372.1|
Length = 145
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 441 TFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGL 560
TF+ GY +LFS W ++ G + + +F +A L E L
Sbjct: 33 TFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWL 72
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Frame = -1
Query: 444 TSWTCPYCGYCDHHGL----KK---CGHCDHSYLCCAQ 352
+SW CP C C+ G KK C CD +Y C Q
Sbjct: 206 SSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQ 243
>At5g22260.1 68418.m02593 male sterility 1 protein, putative (MS1)
identical to male sterility 1 protein [Arabidopsis
thaliana] gi|15554513|emb|CAC69663 PMID:11696184;
contains Pfam profile PF00628: PHD-finger; identical to
cDNA male sterility 1 protein (ms1 gene) GI:15554514
Length = 672
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 264 GHEHHGIDHSRHIGHQMPINGLLNSS 341
GH HG HS GH + +NG+ S
Sbjct: 153 GHVLHGFFHSNGFGHLLSLNGIETGS 178
>At3g17750.1 68416.m02265 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 279 GIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGY 458
G+ + HI ++ + + + N + + MND +V T SG+ D TF G+
Sbjct: 67 GLHNDSHISDELVVKEIQCGAANNLHESNLMNDVSVQTQSGNADFWEER----FTFAEGF 122
Query: 459 IETIL-FSWWNVT 494
+T L WN T
Sbjct: 123 EDTELDLPPWNHT 135
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Frame = +3
Query: 255 GHAGHEH---HGIDHSRHIGHQ-MPINGLLNSSYNRIVHNT--DMNDHNVHTFSGHGDHS 416
G G +H HG++H G Q ++G+ + + + H +M +H G H
Sbjct: 180 GMHGMQHQGGHGMEHQGGHGMQHQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHR 239
Query: 417 SHNMGMSMTFHGGYIETILFSWWNVTEV-GEFVG 515
+ GM H G + W V+++ G+ +G
Sbjct: 240 IQHQGMHGMQHPGGVVVNATENWRVSKITGQKLG 273
>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
contains Pfam PF00641: Zn-finger in Ran binding protein
and others; contains Prosite PS00018: EF-hand
calcium-binding domain; similar to Zinc finger protein
265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
musculus}
Length = 849
Score = 28.3 bits (60), Expect = 4.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -1
Query: 438 WTCPYCGYCDHHGLKKCGHCD 376
W CP C + ++ C HCD
Sbjct: 408 WECPECNFLNYRRNMACFHCD 428
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Frame = -1
Query: 444 TSWTCPYCGYC-------DHHGLKKCGHCDHSYLCCAQ 352
+SW+CP C C D + C CD +Y C Q
Sbjct: 193 SSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQ 230
>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
Pfam:PF00646
Length = 465
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +1
Query: 220 WTNIMNTTIWIWAMLGMNTMGLIIQDI*ATKCLLMDFLIHHITELC 357
+ N+ + TI G M +++++ + L+++ L+HH+TE C
Sbjct: 317 FNNLKSLTIESNERRGWQAMPVLLRNCPHLETLVLEGLLHHVTEKC 362
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -1
Query: 447 ETSWTCPYCGYCDHHGLKKCGHCDHSYLC--CAQFCYM 340
E C C Y H C CD+S +C CA F YM
Sbjct: 515 EKETRCQMCKYDSGHSKLICMDCDYS-ICFRCATFPYM 551
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 429 PYCGYCDHHGLKKCGHCDHSYLCCAQFCYMMN*EVH 322
P CGY G + D S LC +FC+ + + H
Sbjct: 220 PGCGYAVEFGGSESSSYDVSCLCSYRFCWNCSEDAH 255
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 276 HGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHN 383
H DH H GH P + +N S + H+ +N ++
Sbjct: 534 HYDDHQHHNGHHHPFDHQMNQSAHHHHHHQHINHYH 569
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 453 HRETSWTCPYCGYCDH--HGLKKCGHCDHSYLCCAQFCYMMN*EVH 322
+R+T W CP G CD+ + + G+ D + CC FC+ E H
Sbjct: 211 NRKTKW-CPAPG-CDYAVNFVVGSGNYDVNCRCCYSFCWNCAEEAH 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,683
Number of Sequences: 28952
Number of extensions: 303952
Number of successful extensions: 789
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -