Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k12r
         (575 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2R1Z9 Cluster: Putative sequencing error; n=1; Aspergi...    36   0.90 
UniRef50_A1C8P5 Cluster: C6 zinc finger domain protein; n=1; Asp...    36   0.90 
UniRef50_Q8EUS0 Cluster: Protease; n=1; Mycoplasma penetrans|Rep...    33   3.6  
UniRef50_A5ZT31 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_Q2I0E2 Cluster: Grain length and weight protein; n=2; O...    33   3.6  
UniRef50_Q7QSK5 Cluster: GLP_618_35448_35032; n=1; Giardia lambl...    33   3.6  
UniRef50_UPI000023D0DB Cluster: hypothetical protein FG03044.1; ...    33   4.8  
UniRef50_Q9TX75 Cluster: DNA polymerase alpha, DNAPOL alpha; n=1...    33   4.8  
UniRef50_A0BDK8 Cluster: Chromosome undetermined scaffold_100, w...    33   4.8  
UniRef50_UPI00006CB6BA Cluster: hypothetical protein TTHERM_0049...    33   6.4  
UniRef50_A3C6H7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q55HH5 Cluster: Putative uncharacterized protein; n=2; ...    33   6.4  
UniRef50_A2R275 Cluster: Remark: the CZF1 gene; n=1; Aspergillus...    33   6.4  
UniRef50_Q10X39 Cluster: Lysozyme; n=1; Trichodesmium erythraeum...    32   8.4  

>UniRef50_A2R1Z9 Cluster: Putative sequencing error; n=1;
           Aspergillus niger|Rep: Putative sequencing error -
           Aspergillus niger
          Length = 725

 Score = 35.5 bits (78), Expect = 0.90
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 509 CGRASTSCTRCRAGRRSCD 453
           CGR STSC  CRA +R CD
Sbjct: 4   CGRPSTSCNNCRAKKRRCD 22


>UniRef50_A1C8P5 Cluster: C6 zinc finger domain protein; n=1;
           Aspergillus clavatus|Rep: C6 zinc finger domain protein
           - Aspergillus clavatus
          Length = 466

 Score = 35.5 bits (78), Expect = 0.90
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 539 CATTRAXSAGCGRASTSCTRCRAGRRSC 456
           C T RA    CGR   SCT+C   RR C
Sbjct: 11  CGTCRARKIACGRERPSCTQCIKARRFC 38


>UniRef50_Q8EUS0 Cluster: Protease; n=1; Mycoplasma penetrans|Rep:
           Protease - Mycoplasma penetrans
          Length = 406

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 80  IWQITARLIDTLRQTHKIYYLQCNRMIKFDDKIV 181
           IW++   +ID ++   K+Y +Q N+ IKF++ ++
Sbjct: 366 IWEMNGEIIDVVKTPMKLYKVQFNKPIKFEEYLI 399


>UniRef50_A5ZT31 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 70

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 217 SMIYIVHWHRLVHNFVIKLYHSITL*IIYFVSLS*SIYESCSDLP 83
           S+I I H  R VH F+   ++S+ + +I+FV  S S +    ++P
Sbjct: 19  SIINITHTRRFVHAFLTGKFYSVKISVIFFVIESPSFHHQMMEIP 63


>UniRef50_Q2I0E2 Cluster: Grain length and weight protein; n=2;
           Oryza sativa|Rep: Grain length and weight protein -
           Oryza sativa subsp. indica (Rice)
          Length = 232

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 566 RRACCWRWSCATTRAXSAGCGRASTSCTRCRAGRRSC 456
           R +CC   +C    + S+ CG A T  + CR  RRSC
Sbjct: 128 RPSCCCNCNCNCCSSSSSSCGAALTK-SPCRCRRRSC 163


>UniRef50_Q7QSK5 Cluster: GLP_618_35448_35032; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_618_35448_35032 - Giardia lamblia
           ATCC 50803
          Length = 138

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 545 WSCATTRAXSAGCGRASTSCTRCRAGRRSC 456
           W    ++  +  C R S+ C RCRAGR  C
Sbjct: 109 WESRRSQTRTCRCPRRSSRCRRCRAGRTGC 138


>UniRef50_UPI000023D0DB Cluster: hypothetical protein FG03044.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG03044.1 - Gibberella zeae PH-1
          Length = 568

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 548 RWSCATTRAXSAGCGRASTSCTRCRAGRRSC 456
           ++ C T +A    C  A  +C RCR+ +R C
Sbjct: 22  KYGCYTCKARRIKCDEAKPTCQRCRSSKREC 52


>UniRef50_Q9TX75 Cluster: DNA polymerase alpha, DNAPOL alpha; n=10;
            Plasmodium|Rep: DNA polymerase alpha, DNAPOL alpha -
            Plasmodium falciparum
          Length = 1855

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
 Frame = +1

Query: 10   KCSTIFCIHYIRNVIF-------NIFFTELYLANHC--KTHRYFTTNSQN 132
            KC T   I  IRN IF       N F+ +LY+   C  KT R F  N +N
Sbjct: 1566 KCLTYLSIEQIRNYIFSFIHHLCNTFYKQLYICQGCTLKTRRIFLKNDKN 1615


>UniRef50_A0BDK8 Cluster: Chromosome undetermined scaffold_100, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_100, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1673

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 20   QYFVYITY-ETSYLIYFLLNCIWQITARLIDTLRQTHKIY-YLQ 145
            ++F  ITY ET YLI FLL  +W I   LI   RQ H+ Y Y+Q
Sbjct: 1224 EFFNLITYFETEYLI-FLLVLLWIIFFMLILQFRQWHQPYIYMQ 1266


>UniRef50_UPI00006CB6BA Cluster: hypothetical protein
           TTHERM_00492690; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00492690 - Tetrahymena
           thermophila SB210
          Length = 561

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 242 EPRSALQLFDDLYRTLASPSSQFCHQTLSFDYIVNNIF 129
           EP   LQ+  D++ T   P S FC     F Y+ NN+F
Sbjct: 489 EPYYILQVGSDVFYTAQGPLSFFCALVFYFMYLKNNVF 526


>UniRef50_A3C6H7 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 107

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 418 RRSNALNV*SRISQERRPARQRVQLVDARPQPALXARVVA 537
           RR     V  R+   R PAR+RV+L   RP+P +  +V+A
Sbjct: 64  RRGGEQRVHGRVPLRRMPARRRVRLPRLRPRPGMPLQVLA 103


>UniRef50_Q55HH5 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 949

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 503 RASTSCTRCRAGRRSCDILD*TLSAFER-RYRAVGISAVNNCEL 375
           RA +SCTRCR+ ++ CD      SA ER +   +G  A++   +
Sbjct: 64  RAISSCTRCRSRKQKCDGKLPACSACERAKVECIGFDAISKTNI 107


>UniRef50_A2R275 Cluster: Remark: the CZF1 gene; n=1; Aspergillus
           niger|Rep: Remark: the CZF1 gene - Aspergillus niger
          Length = 635

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -1

Query: 575 SCVRRACCWRWSCATTRAXSAGCGRASTSCTRCRAGRRSCDILD*TLSAFERRYRAVGIS 396
           SC++ +   R  C T R     C     SCT C+  R  C         + +R RA G  
Sbjct: 13  SCIKPSLRTRTGCLTCRRRKKRCDERRPSCTGCQRNRLECQWESAGSLIWPKRRRARGTG 72

Query: 395 A 393
           A
Sbjct: 73  A 73


>UniRef50_Q10X39 Cluster: Lysozyme; n=1; Trichodesmium erythraeum
           IMS101|Rep: Lysozyme - Trichodesmium erythraeum (strain
           IMS101)
          Length = 414

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 278 VTVCLD*CEPGCEPRSALQLFDDLYRTLASPSSQFCHQTLSF-DY 147
           VTV LD  EPG   RSA+++  D  R   SP +  C  T +  DY
Sbjct: 343 VTVPLDYIEPGTTERSAIEIHIDWNRNYGSPGTVGCIATYNIADY 387


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,903,859
Number of Sequences: 1657284
Number of extensions: 8360842
Number of successful extensions: 24156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24116
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)