Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k12r
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    26   0.26 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    26   0.26 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   5.7  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   7.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.5  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 23  YFVYITYETSYLIYFLLNCIWQITARLIDTLRQTHKIYYLQCNRMIKFDDKIVN*AMPM- 199
           Y  ++ Y+T+ +I   LN ++ +TA +    ++   + +L   +++ FD K+    + + 
Sbjct: 343 YDSFMIYKTTNIIILGLNVVYVVTAWICAITKRDMFVEFLL--KLVDFDSKLQTMNIKVN 400

Query: 200 YDIDHRRVEARS 235
           Y   HR++  +S
Sbjct: 401 YHRVHRKIMVQS 412


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 23  YFVYITYETSYLIYFLLNCIWQITARLIDTLRQTHKIYYLQCNRMIKFDDKIVN*AMPM- 199
           Y  ++ Y+T+ +I   LN ++ +TA +    ++   + +L   +++ FD K+    + + 
Sbjct: 68  YDSFMIYKTTNIIILGLNVVYVVTAWICAITKRDMFVEFLL--KLVDFDSKLQTMNIKVN 125

Query: 200 YDIDHRRVEARS 235
           Y   HR++  +S
Sbjct: 126 YHRVHRKIMVQS 137


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 178 NFVIKLYHSITL*IIYFVSL 119
           NF+I  Y S+ + ++Y+ SL
Sbjct: 323 NFIILFYLSVFVILVYYASL 342


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 161 LSFDYIVNNIFCEFVVKYL*VLQ*FAKYNSVKNILN 54
           ++FD I+ N+ CE   ++   L  F    +  N LN
Sbjct: 180 IAFDNIMKNLICEIDGRHEFFLAEFKSAKTPPNKLN 215


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase
          reverse transcriptase protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 86 AKYNSVKNILNMTFRM 39
          +KYNS+ NI    FR+
Sbjct: 21 SKYNSILNIALKNFRL 36


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase
          reverse transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 86 AKYNSVKNILNMTFRM 39
          +KYNS+ NI    FR+
Sbjct: 21 SKYNSILNIALKNFRL 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,933
Number of Sequences: 336
Number of extensions: 2452
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)