Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k12r
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3)              30   1.6  
SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)                   28   4.8  
SB_51251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            28   6.3  
SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)                 28   6.3  
SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)               28   6.3  
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)               28   6.3  
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)                  27   8.3  

>SB_50564| Best HMM Match : Allexi_40kDa (HMM E-Value=4.3)
          Length = 290

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 368 RNE-VHSYLQH*YPRHDTVVRTHSTSSLGYHRS 463
           RN+ + SYL+H  P H TV  TH+TSS   +RS
Sbjct: 249 RNQTIKSYLRH--PTHCTVHMTHNTSSHSSYRS 279


>SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)
          Length = 611

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 120 CRKVSMSLAVICQIQFSKKYIKYDVSYVMYTKY 22
           C ++    A +CQ +F K+  + DV++ ++T+Y
Sbjct: 499 CIRLVQMFASLCQYKFEKETEESDVAHTVFTQY 531


>SB_51251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 105 MSLAVI-CQIQFSKKYIKYDVSYVMYTKYC 19
           M LAVI C   F  +Y +Y  +YVMYT  C
Sbjct: 251 MQLAVIDCLEVFWGEYSRYRQTYVMYTVMC 280


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 220 SSMIYIVHWHRLVHNFVIKLYHSITL*IIY 131
           S  I IVH HR +   ++ ++HS+++ I+Y
Sbjct: 360 SLSITIVHVHRSLSTTIVYVHHSLSITIVY 389


>SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)
          Length = 330

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 251 PGCEPRSALQLFDDLYRTLASPSSQFCHQTLSFDY 147
           PGC+P   L +   L+R L S  + F +  +  DY
Sbjct: 286 PGCKPSLKLTIVSSLFRYLNSAPNFFVYAFMKADY 320


>SB_12699| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
          Length = 215

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 314 YICST*IVSKEIVTVCLD*CEPGCEPRSALQLFDDLYRTLASPSSQFC 171
           Y C   +VSKE        C   C+P+S +  FD LY+ +  P S  C
Sbjct: 73  YQCDNQLVSKECTVTSNRVCLNKCKPKSGM-YFDILYQ-VCEPCSWCC 118


>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
          Length = 511

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 314 YICST*IVSKEIVTVCLD*CEPGCEPRSALQLFDDLYRTLASPSSQFC 171
           Y C   +VSKE        C   C+P+S +  FD LY+ +  P S  C
Sbjct: 73  YQCDNQLVSKECTVTSNRVCLNKCKPKSGM-YFDILYQ-VCEPCSWCC 118


>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
          Length = 687

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 527 RAXSAGCGRASTSCTRCRAGRRSCDILD*TLSAFERRYR 411
           RA  A   RA   C RCR G+    IL   L+  +R++R
Sbjct: 340 RANRANISRAKALCKRCRTGQHFWRILA-RLNTRQRKFR 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,161
Number of Sequences: 59808
Number of extensions: 275635
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)