Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k12r
         (575 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029264-1|AAH29264.1|  305|Homo sapiens ring finger protein 148...    32   1.3  
AK098654-1|BAC05367.1|  305|Homo sapiens protein ( Homo sapiens ...    32   1.3  
BC063887-1|AAH63887.1|  598|Homo sapiens KIAA0999 protein protein.     30   5.1  

>BC029264-1|AAH29264.1|  305|Homo sapiens ring finger protein 148
           protein.
          Length = 305

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 2   YLENVQQYFVYI-TYETSYLIYFLLNCIWQITARL 103
           +++ V  Y +Y+ T+  + + YF L+C+W++T R+
Sbjct: 183 HMQWVSHYIMYLFTFLAATIAYFYLDCVWRLTPRV 217


>AK098654-1|BAC05367.1|  305|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25788 fis, clone TST06884. ).
          Length = 305

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 2   YLENVQQYFVYI-TYETSYLIYFLLNCIWQITARL 103
           +++ V  Y +Y+ T+  + + YF L+C+W++T R+
Sbjct: 183 HMQWVSHYIMYLFTFLAATIAYFYLDCVWRLTPRV 217


>BC063887-1|AAH63887.1|  598|Homo sapiens KIAA0999 protein protein.
          Length = 598

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 545 WSCATTRAXSAGCGRASTSCTRCRAGR 465
           W    T A S  C R+ +SC RC  GR
Sbjct: 13  WKKWATTAASNSCSRSVSSCRRCTGGR 39


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,458,197
Number of Sequences: 237096
Number of extensions: 1156486
Number of successful extensions: 2644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2622
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)