Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k12r
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi...    27   6.8  
At3g08750.1 68416.m01017 F-box family protein contains F-box dom...    27   6.8  
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida...    27   9.0  
At1g11925.1 68414.m01377 stigma-specific Stig1 family protein co...    27   9.0  

>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
           to RAD54 GB:CAA71278 from [Drosophila melanogaster]
           (Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
          Length = 852

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 239 PRSALQLFDDLYRTLASPSSQFCHQTLSFDYIV 141
           PRSALQ+    Y T    SS+FC Q+ S D ++
Sbjct: 185 PRSALQVLIISYETFRMHSSKFC-QSESCDLLI 216


>At3g08750.1 68416.m01017 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 150 LHCK*YIL*VCRKVSMSLAVICQIQFSKKYIKYDVSYVMYTKY 22
           +HC   +L  CRK   SLAV   +    K+IK  V Y ++T Y
Sbjct: 96  VHCDGLMLCTCRKWDNSLAVWNPVLREIKWIKPSVCY-LHTDY 137


>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
           family protein similar to  laccase [Pinus
           taeda][GI:13661197]
          Length = 565

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 55  FNIFFTELYLANHCKTHRYFTT 120
           FN+F   L+L N+C  H Y  T
Sbjct: 6   FNLFLISLFLYNNCIAHHYTFT 27


>At1g11925.1 68414.m01377 stigma-specific Stig1 family protein
           contains Pfam profile PF04885: Stigma-specific protein,
           Stig1
          Length = 121

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -1

Query: 563 RACCWRWSCATTRAXSAGCGRASTSCTRCRAGRRS 459
           R CC R  C   R     CGR   SC       RS
Sbjct: 64  RNCC-RKKCVDLRTNKLNCGRCGKSCQYSEVALRS 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,886,987
Number of Sequences: 28952
Number of extensions: 179683
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)