Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k12f
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1372 + 33008740-33009130,33009485-33011544 29 2.9
02_02_0190 - 7630282-7630287,7630383-7630547,7630641-7630691,763... 29 2.9
10_08_0281 - 16459830-16459838,16460000-16460173,16461023-164610... 28 5.1
10_08_0277 - 16437023-16437304,16437687-16437833,16440169-164403... 28 5.1
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260... 28 5.1
01_05_0611 - 23644692-23646439,23647011-23647551,23648851-236489... 28 5.1
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 28 6.7
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 28 6.7
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 27 8.9
>04_04_1372 + 33008740-33009130,33009485-33011544
Length = 816
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 362 DTCTCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSY 541
D C C E + CSN + + + L + L +LD + + + +F +FP L +
Sbjct: 61 DDC-CLWERVNCSNITGRVSHLYFSNLYDSNEVLDAL---GHSFWRFDTTVFSSFPELQF 116
Query: 542 IDLSGN 559
+DLS N
Sbjct: 117 LDLSMN 122
>02_02_0190 -
7630282-7630287,7630383-7630547,7630641-7630691,
7630955-7631128,7631882-7632116,7632224-7632306,
7633826-7633866,7633986-7634067
Length = 278
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 461 LDTIIWTNSNI-NYLEIDLFKTFPRLSYIDLSGNVIKK 571
L T++ TN+ + N EID + P+L ++ L N + K
Sbjct: 84 LHTLVLTNNRLTNLAEIDPLASLPKLQFLSLLDNTVTK 121
>10_08_0281 -
16459830-16459838,16460000-16460173,16461023-16461097,
16461484-16461636,16462319-16462582
Length = 224
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = -1
Query: 592 ARTGRSSLLDNVSAQIDVRQSWKCFEQINFEVVNIRVCPDYCI*EVSVFGERRLS*LVVL 413
A+ GR+S + + + V+Q +K E N +V Y + E+ G + LS L++L
Sbjct: 145 AKEGRASKVKRI---LFVQQKYKASEGTNINMV-------YEVGELFELGIQ-LSYLLIL 193
Query: 412 DGRIGAGQVFIVARASVRTD 353
G +GAG F++ + VR +
Sbjct: 194 LGLLGAGTFFVIRQVLVRRE 213
>10_08_0277 -
16437023-16437304,16437687-16437833,16440169-16440342,
16441192-16441266,16441653-16441805,16442488-16442751
Length = 364
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = -1
Query: 592 ARTGRSSLLDNVSAQIDVRQSWKCFEQINFEVVNIRVCPDYCI*EVSVFGERRLS*LVVL 413
A+ GR+S + + + V+Q +K E N +V Y + E+ G + LS L++L
Sbjct: 145 AKEGRASKVKRI---LFVQQKYKASEGTNINMV-------YEVGELFELGIQ-LSYLLIL 193
Query: 412 DGRIGAGQVFIVARASVRTD 353
G +GAG F++ + VR +
Sbjct: 194 LGLLGAGTFFVIRQVLVRRE 213
>04_04_1373 +
33025059-33025422,33025510-33025551,33025836-33026054,
33026145-33026384,33026483-33027508,33027770-33028545
Length = 888
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 383 EHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNV 562
E L +N ++ T+ + GNL + + N + LF + P + +DLSGN+
Sbjct: 271 EVLNLNNNNMNGTLPTEQAIENLGNLRELHLSLNRFAGNIPRSLF-SLPHIELLDLSGNL 329
Query: 563 IK 568
++
Sbjct: 330 LE 331
>01_05_0611 -
23644692-23646439,23647011-23647551,23648851-23648952,
23649244-23649441
Length = 862
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 440 LAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIK 568
+ +GNL + NS L F T RL ++DLS N +K
Sbjct: 335 IGAFGNLTSLNLGQNSFSGVLAEYHFATLERLEFLDLSSNSLK 377
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 526 KCFEQINFEVVNIRVCPDYC 467
+ F ++NF+ VNI VCP C
Sbjct: 351 RAFLRVNFDHVNISVCPRLC 370
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 476 WTN--SNINYLEIDLFKTFPRLSYIDLSGNVIKKTGTACSRS 595
WT+ ++N+LEID+ PR S L N + + A SR+
Sbjct: 44 WTHLLQSMNHLEIDVADFIPRRSAPSLKRNTMTRVKVAMSRT 85
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 380 DEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLE----IDLFKTFPRLSYID 547
+ ++ S SV+ N + + + + W +++ N L +D+ TFP LSY++
Sbjct: 341 ENNIYLSYLSVKHNSFVGSLILP-STVNQNLSWLDASYNRLSGDLPVDINITFPNLSYLN 399
Query: 548 LSGN 559
LS N
Sbjct: 400 LSKN 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,846,379
Number of Sequences: 37544
Number of extensions: 240881
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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