Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k12f
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.24 
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)                    29   3.9  
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   27   9.1  

>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 287 YNPHSLIY*HTSTF-YTNLHNPRYFTSTTDAPKTLILTRTLRNFTFLNETPLHIHDSHVQ 111
           Y+ H  ++ + +T+ YT+  N   +TSTT+     I  + +R   +     +HI+D H++
Sbjct: 127 YDKHIRVHIYNNTYVYTSTINTYVYTSTTNTYGVHIYDKHMRVHIYDKHMRVHIYDKHIR 186



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 257 TSTF-YTNLHNPRYFTSTTDAPKTLILTRTLRNFTFLNETPLHIHDSHVQ 111
           T+T+ YT+  N   +TSTT+     I  + +R   +     +HI+D H++
Sbjct: 11  TNTYVYTSTTNTYVYTSTTNTYGVHIYDKHMRVHIYDKHMRVHIYDKHIR 60


>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1984

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = -1

Query: 439  RRLS*LVVLDGRIGAGQVFIVARASVRTDRHPHSRATSCY*QYCLQPPHYITTLIVLFTN 260
            ++L  +VV+   I A   +++ R   + D     + TS    Y +    ++T L VL+ +
Sbjct: 1663 KKLQIIVVVFISIAASLEYVILRLD-KADHVTFKQTTSTALWYFMHVCRFVTGLHVLYAH 1721

Query: 259  TRPHFTPTCIIHVILH 212
                F PTCI+ +  H
Sbjct: 1722 ALLWFIPTCIMLITGH 1737


>SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)
          Length = 343

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +3

Query: 213 CKITWIMQVGVKCGRVLVNKTMRVVIXXXXXXXXXXXXLVARLWGWRSVLT 365
           CK+  +    +KCG    N   RV I            L   LWG +S L+
Sbjct: 172 CKLNCLRNTNLKCGGDWANSIYRVAIKLSQFIGCYLESLPRDLWGDQSALS 222


>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 261 THVHILHQLA*STLFYID-NRRAEDTHSHSYVTKLHLFK*NSIAHSRFTRSTSCTNNFKL 85
           T V I  +   +TL+  D N    +  SH+   KL L + NS++      +TS  +  K 
Sbjct: 629 TEVSICSRKCVATLYVFDGNASVSNLISHNTAKKLQLLRVNSVSEQEQQCNTSLGSEMKS 688

Query: 84  N 82
           N
Sbjct: 689 N 689


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,906,664
Number of Sequences: 59808
Number of extensions: 312951
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)