Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k12f
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.25 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   1.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.2  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +2

Query: 371 TCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDL 550
           +C  EH   +N S +  K  K    +   LLD  I   S+I   E+D+ K    L+    
Sbjct: 424 SCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDIT--ELDVSKRCKDLA--SF 479

Query: 551 SGNVIKKTGT 580
            GN++++T T
Sbjct: 480 MGNLLQETRT 489


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 371 TCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEI 508
           +C  EH   +N S +  K  K    +   LLD  I   S+I  L++
Sbjct: 130 SCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDV 175


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 212 STTDAPKTLILTRTLRNFTFLNETPLHIHDSH 117
           STT  P T  + +  +     N T   IH  H
Sbjct: 82  STTIVPTTQEINKPFKRLELFNITTTTIHSIH 113


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 180 HSYVTKLHLFK*NSIAHSRFTRSTSCTNNFKLNI 79
           H   T L   +  SIA S F   T C   F + +
Sbjct: 156 HGKTTLLDALRNTSIAKSEFGGITQCIGAFDVTL 189


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 140 PLHIHDSHVQHRAQTI 93
           PLH H + V H  QT+
Sbjct: 103 PLHPHTAMVTHLPQTL 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,060
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)