Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k12f
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09760.1 68414.m01095 U2 small nuclear ribonucleoprotein A, p... 32 0.26
At5g14620.1 68418.m01714 cytosine methyltransferase (DRM2) ident... 31 0.60
At4g12350.1 68417.m01953 transcription factor, putative (MYB42) ... 31 0.60
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont... 31 0.60
At5g27060.1 68418.m03229 disease resistance family protein conta... 29 1.8
At1g63350.1 68414.m07161 disease resistance protein (CC-NBS-LRR ... 29 2.4
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 29 3.2
At1g15890.1 68414.m01906 disease resistance protein (CC-NBS-LRR ... 29 3.2
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 28 5.6
At2g12400.1 68415.m01339 expressed protein 27 7.4
At1g69910.1 68414.m08045 protein kinase family protein contains ... 27 7.4
At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR... 27 9.8
At1g58350.1 68414.m06637 expressed protein contains Pfam profile... 27 9.8
At1g09980.1 68414.m01126 expressed protein contains Pfam profile... 27 9.8
>At1g09760.1 68414.m01095 U2 small nuclear ribonucleoprotein A,
putative identical to U2 small nuclear ribonucleoprotein
A' (U2 snRNP-A') [Arabidopsis thaliana]
SWISS-PROT:P43333; supported by
cDNA:gi_16649064_gb_AY059902.1_
Length = 249
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +2
Query: 410 VQDNKLTKTT--LAKYGNLLDTIIWTNSN-INYLEIDLFKTFPRLSYIDLSGNVIKK 571
+ +N++T+ L ++ L +++ TN+ +N +EID + P+L Y+ L N I K
Sbjct: 71 INNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSLLDNNITK 127
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 410 VQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGN 559
+ DN++ K Y N L T++ N+ I + +L + P+L + L+ N
Sbjct: 49 LSDNEIVKLENFPYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNN 98
>At5g14620.1 68418.m01714 cytosine methyltransferase (DRM2)
identical to cytosine methyltransferase GI:7658293 from
[Arabidopsis thaliana]
Length = 626
Score = 31.1 bits (67), Expect = 0.60
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 470 IIWTNSNINYLEIDLFKTFPRLSYID-LSGNVIKKTGTACSRSSV 601
+IW N + ++LEID F++ PR S I + V G A + SS+
Sbjct: 2 VIWNNDDDDFLEIDNFQSSPRSSPIHAMQCRVENLAGVAVTTSSL 46
>At4g12350.1 68417.m01953 transcription factor, putative (MYB42)
identical to cDNA putative transcription factor (MYB42)
GI:5823330
Length = 168
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 365 TCTCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTN 484
T T DD +T N+S D +L + YG+L + I+WTN
Sbjct: 46 TNTIDDSIITHQNSSNDDYELLGDIIHNYGDLFN-ILWTN 84
>At2g33080.1 68415.m04056 leucine-rich repeat family protein
contains leucine rich-repeat domain Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 740
Score = 31.1 bits (67), Expect = 0.60
Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +2
Query: 488 NINY-LEIDLFKTFPRLSYIDLSGNVI 565
NI+Y L+++LF + L+Y+DLSGN I
Sbjct: 253 NISYPLDLNLFSSLKSLTYLDLSGNSI 279
>At5g27060.1 68418.m03229 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 957
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 407 SVQDNKLTKT---TLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKT 574
S+ +NK T T + NL+D N+ LF T P L+YI L+GN +K T
Sbjct: 319 SLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLF-TIPSLTYIRLNGNQLKGT 376
>At1g63350.1 68414.m07161 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 898
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 461 LDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGN 559
L T++ ++++ + + F + P+L+ +DLSGN
Sbjct: 539 LTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGN 571
>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
protein
Length = 1143
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 386 HLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVI 565
HL S++ + L + +KY NL+ + N+ L DLF + +L +DLS N I
Sbjct: 131 HLELSSSGLIGT-LPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNI 189
>At1g15890.1 68414.m01906 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 851
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 407 SVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGN 559
S+ N++ + + L T++ N+ + ++ D F+ P L +DLS N
Sbjct: 519 SLMCNQIANISSSSNSPNLSTLLLQNNKLVHISCDFFRFMPALVVLDLSRN 569
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 380 DEHLTCSNTSVQDNKLTKTTLAKYGNLLDTII--WTNSNINYLEIDL 514
D HL+ +N S+ D+KL T K L + II WTN + L +DL
Sbjct: 389 DNHLSSTNLSISDHKLDLTDEDKLA-LDEAIILAWTNDEFDAL-LDL 433
>At2g12400.1 68415.m01339 expressed protein
Length = 541
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 359 PDTCTCDDEHLTCSNTSVQDNKLTKTTLAKYG--NLLDTIIWTNSNINY 499
P T D+ L C + + LT+T L Y NLLD I +N N+
Sbjct: 325 PTAHTALDDILPCVDNATARETLTRTKLVTYQLVNLLDNAISNMTNRNF 373
>At1g69910.1 68414.m08045 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 461 LDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKTGTACSRSSV 601
L I TN N N F + P +IDL+G+ + + ++CSR S+
Sbjct: 90 LSPITNTNRNTNNCSSLRFSSSPN-RFIDLTGSPFRVSDSSCSRLSL 135
>At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 455 NLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKK 571
+LL+ + N+ L D FP+L+Y+DLS + KK
Sbjct: 884 SLLELCLDNCKNVKSLS-DQLSHFPKLAYLDLSSHDFKK 921
>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
PF05057: Protein of unknown function (DUF676);
supporting cDNA gi|6520166|dbj|AB028199.1|
Length = 794
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 449 YGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDL 550
YG L++ I ++I +LE D+F F S+ DL
Sbjct: 759 YGRNLNSFIGRAAHIEFLESDIFARFIMWSFQDL 792
>At1g09980.1 68414.m01126 expressed protein contains Pfam profile
PF05057: Protein of unknown function (DUF676);
non-consensus GC donor splice site at exon boundary
144764
Length = 802
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 434 TTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDL 550
TTL YG L++ I ++I +LE D+F F S+ DL
Sbjct: 764 TTL--YGRNLNSFIGRAAHIEFLESDVFARFIMWSFQDL 800
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,432,507
Number of Sequences: 28952
Number of extensions: 202576
Number of successful extensions: 615
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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