SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k11r
         (772 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Y7T6 Cluster: Putative uncharacterized protein; n=4; ...    38   0.37 
UniRef50_UPI0000DBFC45 Cluster: UPI0000DBFC45 related cluster; n...    36   1.1  
UniRef50_Q7VG37 Cluster: S-adenosylmethionine:tRNA ribosyltransf...    36   1.1  
UniRef50_Q98RY6 Cluster: Putative uncharacterized protein orf519...    34   4.5  
UniRef50_UPI00015B58A6 Cluster: PREDICTED: similar to CG6839-PA;...    33   5.9  

>UniRef50_Q4Y7T6 Cluster: Putative uncharacterized protein; n=4;
            Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein - Plasmodium chabaudi
          Length = 1594

 Score = 37.5 bits (83), Expect = 0.37
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -2

Query: 723  KSNYLLKKV-TGRNLNSH*YPNKQKYFKNFLTKMNSNRFLNA 601
            K+NY L+K     N+NS+     Q YF+NF+ K+N + FLNA
Sbjct: 1471 KTNYNLEKFFKNHNINSNINFTDQAYFQNFMKKVNHDAFLNA 1512


>UniRef50_UPI0000DBFC45 Cluster: UPI0000DBFC45 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DBFC45 UniRef100 entry -
           Rattus norvegicus
          Length = 272

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +3

Query: 417 HNFKINIHYILNLCLYYLRMKVYIFQSTKYQFFIY-YI*ILKIAKMCAEIKICLCNSFTV 593
           H +     YI+ LC+Y   + VYIF       +++ Y+ +     +C  I +C+C  F  
Sbjct: 57  HVYMYMCMYIVYLCVYVC-IYVYIFMCVYLYMYVHVYVDVFLCVHLC--IFMCVCVYF-- 111

Query: 594 LFMHLKICYYSFW*GNF*STSACSGISGCL 683
           +FM + IC Y +       T  CS +  CL
Sbjct: 112 IFMFVGICVYIY-------TCICSSVCVCL 134


>UniRef50_Q7VG37 Cluster: S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase; n=6; Helicobacter|Rep:
           S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
           Helicobacter hepaticus
          Length = 365

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 311 GTYSCGLKTYLTTISCSYYSKEDISNCIINSFRVIT*LQNQHSL-YFKSLLILPTY 475
           G   CG K  + T S + +    +  C+ N  RV++ +QN+H+L Y + L +L  Y
Sbjct: 121 GRVKCGDKLLINTDSTNPFLIAQVQECLDNGLRVVSFMQNEHALEYIQVLDMLEKY 176


>UniRef50_Q98RY6 Cluster: Putative uncharacterized protein orf519;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf519 - Guillardia theta (Cryptomonas phi)
          Length = 519

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 569 LFMQFIYCIIYAFKNLLLFILVRKFLKYFCLFGYQWLFRFLPVTFFKR 712
           LF+     I+   +N L+F+L + FL +FC  G   +F+F  +   K+
Sbjct: 149 LFLYNFALIVKNSENRLIFLLKKPFLFFFCNLGIHLIFKFYTIQSLKK 196


>UniRef50_UPI00015B58A6 Cluster: PREDICTED: similar to CG6839-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           CG6839-PA - Nasonia vitripennis
          Length = 503

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 317 YSCGLKTYLTTISCSYYSKEDISNCIIN 400
           +  GL T LT I+C+Y S+ D+  C IN
Sbjct: 58  FLAGLLTSLTAITCNYVSEPDVKTCTIN 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,673,617
Number of Sequences: 1657284
Number of extensions: 12060246
Number of successful extensions: 26362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26333
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -