Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k11r
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0187 - 1492732-1492935,1493708-1493765,1494871-1494947,149...    29   5.4  
08_01_0776 + 7533790-7533984,7534234-7534419,7534542-7534631,753...    28   7.2  
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193...    28   7.2  

>03_01_0187 -
           1492732-1492935,1493708-1493765,1494871-1494947,
           1495086-1495160,1495259-1495315,1495451-1495567,
           1495805-1495915,1496029-1496151,1496304-1496393,
           1496480-1496605,1496687-1496740,1496975-1497055,
           1497147-1497254,1497443-1497514,1497626-1497688,
           1498417-1498629
          Length = 542

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 137 WTTLWLTRCKWLMKLRHKKHKC 202
           W   W+ +CKW  +L H  H C
Sbjct: 475 WDAKWICKCKW--ELGHHNHSC 494


>08_01_0776 +
           7533790-7533984,7534234-7534419,7534542-7534631,
           7535284-7535368,7535759-7535925,7536250-7536438,
           7537183-7537296,7537391-7537510,7537590-7537712,
           7538217-7538315,7538735-7538791,7539272-7539318,
           7539391-7539534,7540028-7540205,7540663-7540743,
           7540926-7541009,7541416-7541616
          Length = 719

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 365 YSKEDISNCIINSFRVIT*LQNQHSLYFKSLLILPTYEGLYFSVNKISIFYLLHLDS*DS 544
           + K++I  CI  +   I  LQN    +F S  I  TY G +F++  +S     + DS   
Sbjct: 513 HRKDEIDQCIRKATEFIEKLQNDDGSWFGSWGICFTY-GTWFAIEGLSAVGQCYDDSTCI 571

Query: 545 KNVC 556
           +  C
Sbjct: 572 RKAC 575


>06_01_0262 -
           1930552-1930632,1931096-1931152,1931236-1931287,
           1931373-1931461,1931551-1931601,1931696-1931890,
           1932015-1932095,1932205-1932267,1933045-1933119,
           1933194-1933352,1933353-1933463,1933536-1933616,
           1933721-1933807,1933920-1933967,1934357-1934421,
           1935002-1935065,1935220-1935288
          Length = 475

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 616 QIFKCINNTVNELHKQILISAHIFAI 539
           Q+  C+NN    +H  ++ SAH+ A+
Sbjct: 175 QVKYCLNNKTMSMHDSVIFSAHLAAV 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,674,091
Number of Sequences: 37544
Number of extensions: 297846
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)