Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k11r
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)        28   7.3  
SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)                 28   9.6  
SB_38728| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-07)                 28   9.6  

>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 596 IYAFKNLLLFILVRKFLKYFCLFGYQWL 679
           I A  NL++  +V  FL YFCL  + W+
Sbjct: 348 IEATSNLVVCRVVAAFLHYFCLTSFAWM 375


>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
          Length = 432

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +2

Query: 236 KPLF*SASSFKPKCIAVSQ*K*ADSGTYSCGLKTYLTTISCSYYSKEDISNC 391
           +PL  S S  K     VS    A S T SC LK   TT+SC   +     +C
Sbjct: 304 QPLVVSCSYLKALSTTVSCQSKALSTTVSCQLKALSTTVSCQSKALSTTVSC 355


>SB_34228| Best HMM Match : RasGAP (HMM E-Value=0.0092)
          Length = 633

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 34  EWRNLNLLQGYNTNALFSSSLVHIACF 114
           +WRNL  LQ Y + + +++SL+  A F
Sbjct: 56  QWRNLGRLQAYPSKSSYATSLLDCARF 82


>SB_38728| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-07)
          Length = 401

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 28  LDEWRNLNLLQGYNTNALFSSSLVHIACFFL*LL 129
           LD W + ++L G   +A   + LV   CFFL LL
Sbjct: 160 LDVWTSFDMLAGNKADAKLYNILVIGVCFFLPLL 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,041,480
Number of Sequences: 59808
Number of extensions: 379224
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)