Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k11r
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 29 4.8
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p... 29 4.8
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p... 29 4.8
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p... 29 4.8
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote... 29 4.8
AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine r... 29 4.8
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1441 RACLNCPLTVDGSREWFIRLWNENFIPY 1468
>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1475 RACLNCPLTVDGSREWFIRLWNENFIPY 1502
>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1412 RACLNCPLTVDGSREWFIRLWNENFIPY 1439
>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1546 RACLNCPLTVDGSREWFIRLWNENFIPY 1573
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical protein
F45E10.1b protein.
Length = 1549
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1441 RACLNCPLTVDGSREWFIRLWNENFIPY 1468
>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical protein
F45E10.1a protein.
Length = 1583
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1475 RACLNCPLTVDGSREWFIRLWNENFIPY 1502
>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical protein
F45E10.1d protein.
Length = 1520
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1412 RACLNCPLTVDGSREWFIRLWNENFIPY 1439
>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical protein
F45E10.1c protein.
Length = 1654
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1546 RACLNCPLTVDGSREWFIRLWNENFIPY 1573
>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical protein
F45E10.1e protein.
Length = 1234
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1126 RACLNCPLTVDGSREWFIRLWNENFIPY 1153
>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
UNC-53 protein.
Length = 1583
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 QAEMHCCFTVEIGR*WYLLMWAEN-IPY 345
+A ++C TV+ R W++ +W EN IPY
Sbjct: 1475 RACLNCPLTVDGSREWFIRLWNENFIPY 1502
>AC006790-13|AAF60737.2| 351|Caenorhabditis elegans Serpentine
receptor, class z protein5 protein.
Length = 351
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 581 FIYCIIYAFKNLLLFILV--RKFLKYFCLFGYQWL 679
FI C+I+ N+LL +L R F+ Y FG +W+
Sbjct: 104 FISCVIFPVFNILLTLLAVQRFFIYYSDRFGKKWI 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,849
Number of Sequences: 27780
Number of extensions: 317874
Number of successful extensions: 770
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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