Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k11f
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   3.8  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   5.0  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   5.0  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   6.6  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   6.6  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    25   6.6  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   8.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   8.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.8  

>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +3

Query: 30  LPLCNRILLDIISINHSLEKKTKMFGLRASVMKSAIIVPTMFSQQTRNTFILRRRWPPPL 209
           LP   R  L   ++N ++    K+ GLR SV  S  +       +T ++  ++    PP+
Sbjct: 182 LPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPI 241

Query: 210 HK 215
           +K
Sbjct: 242 YK 243


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 195 WPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGV 335
           W P L      V K  G  FVYD++   S  K   +  + N   E V
Sbjct: 279 WKPVLETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQV 325


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 291 KPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILPG 401
           +P+  I+LN  ++   + G V    L+ +  NFI PG
Sbjct: 470 EPETGIILNDHMDDFASPGIVNAFGLSPSPYNFIAPG 506


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 255 VYDLVEDTSVKKKPDIRIVLNQFVEGV 335
           V DL+   ++K++P + I +N  V+G+
Sbjct: 87  VRDLIYQNALKQQPTLGIFMNPLVQGI 113


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 598 LRNEALRCQGCRVHGSELLIVTRSTNLCKQSIVLFTNGEL 479
           L +EAL+  GC++H S   I +R  N C  S +     ++
Sbjct: 4   LLHEALQ-NGCKLHKSVEFIQSRDDNACFGSYIAVAQNDI 42


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 261 DLVEDTSVKKKPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILPGLAVYANPENLEKY 440
           D+V D S+ +  D   ++     G+    DVL       ++N + PG  V  +P+ +  +
Sbjct: 17  DIVNDVSMTEMEDE--IMEDEQMGLVDGEDVLEEFDKSIHQNLVTPGQLVTDDPQFMRGH 74

Query: 441 KTY 449
            TY
Sbjct: 75  GTY 77


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 492 QMESCEYFLLEDVFHRFYIFPNF 424
           +++S    L+++V H FYIF  F
Sbjct: 318 ELKSVSQLLIDEVLHPFYIFQVF 340


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 75  HSLEKKTKMFGLRASVMKSAIIVPTMFSQ 161
           HS+  K   +G R S+  S +  PT FS+
Sbjct: 821 HSVSTKPSSYGTRRSLAGSMLQKPTQFSR 849


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 18  SDTFLPLCNRILLDIISINHSLEKKTKMFGLRASV 122
           S   L LC   L D + I+ SL+++   +GL+ S+
Sbjct: 425 SSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSI 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,563
Number of Sequences: 5004
Number of extensions: 52806
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)