Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k11f
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    35   0.045
02_05_1266 - 35339279-35339332,35339426-35339519,35339622-353396...    31   0.73 
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     29   3.9  
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    27   9.0  
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809...    27   9.0  

>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
            1178179-1178378,1178505-1178605,1178747-1179369,
            1179451-1179546,1179637-1179798,1179889-1180068,
            1180173-1180323,1180408-1180641,1180753-1180913,
            1181041-1181163,1181261-1181421,1181655-1181877,
            1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 150  MFSQQTRNTFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTS 281
            MF++QT N   LRR+WP P ++   +      + FVY +  +TS
Sbjct: 1796 MFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTS 1839


>02_05_1266 -
           35339279-35339332,35339426-35339519,35339622-35339669,
           35339739-35339851,35340121-35340166,35340517-35340644,
           35341312-35341434
          Length = 201

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 285 KKKPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILP-GLAVYANPENLEKYKTYEKR 458
           K K   +++L   +  VG  GD L +     Y NF+LP G A    PE L++ +  ++R
Sbjct: 35  KVKKYRQVILTDDIAEVGKKGDTLKVRAG-FYRNFLLPKGKATLLTPEVLKEMQVEQER 92


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 279 SVKKKPDIRIVLNQFVEGVG 338
           SV ++PDI+ +LN   EGVG
Sbjct: 204 SVSQRPDIKKILNDIAEGVG 223


>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 279 SVKKKPDIRIVLNQFVEGVGTTGDV 353
           S+ + P+IR +L   ++G+G+ GDV
Sbjct: 225 SISRTPNIRKILVDMLKGLGSNGDV 249


>04_04_1188 +
           31579833-31579914,31580001-31580176,31580822-31580923,
           31581015-31581245,31581821-31581922,31582092-31582184,
           31582275-31582379,31582455-31582514,31582621-31582698,
           31582778-31582924,31583011-31583109,31583178-31583267,
           31583360-31583451,31583529-31583646,31583783-31583871,
           31583998-31584088,31584203-31584294,31584442-31584749,
           31584866-31584897
          Length = 728

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 297 DIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILPGLAVYANPENLEKYKTYE 452
           DI  + N   E  G+ G++  + + K YE     G+A     +N    K YE
Sbjct: 582 DIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYE 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,568
Number of Sequences: 37544
Number of extensions: 311992
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)