Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k11f
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004517-1|AAH04517.1|  267|Homo sapiens mitochondrial ribosomal...    83   8e-16
AL589765-9|CAI17171.1|  267|Homo sapiens mitochondrial ribosomal...    83   8e-16
AB049636-1|BAB40841.1|  267|Homo sapiens mitochondrial ribosomal...    83   8e-16
AL589765-10|CAI17172.1|  233|Homo sapiens mitochondrial ribosoma...    76   9e-14

>BC004517-1|AAH04517.1|  267|Homo sapiens mitochondrial ribosomal
           protein L9 protein.
          Length = 267

 Score = 83.0 bits (196), Expect = 8e-16
 Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
 Frame = +3

Query: 162 QTRNTFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGVGT 341
           Q R T I+ R W  PL  +G K P++  RH VY LVEDT  + K ++ ++L Q VE VG 
Sbjct: 49  QNRGTVIVERWWKVPLAGEGRK-PRLHRRHRVYKLVEDTKHRPKENLELILTQSVENVGV 107

Query: 342 TGDVLTLHLNKAYENFILPGLAVYANPENLEKYKTYEKRPLEENTHSSPFVK---RTMDC 512
            GD++++  +      +  GLAVYA+PEN + ++  EK   +E        K    T+  
Sbjct: 108 RGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEE-EKLLRQEGKLEKIQTKAGEATVKF 166

Query: 513 LHRLVLRVTMSNSEPWTLQPWHLKASFRKS-GFVV 614
           L    L V M N+  W L P  +   F K+ G VV
Sbjct: 167 LKSCRLEVGMKNNVKWELNPEIVARHFFKNLGVVV 201


>AL589765-9|CAI17171.1|  267|Homo sapiens mitochondrial ribosomal
           protein L9 protein.
          Length = 267

 Score = 83.0 bits (196), Expect = 8e-16
 Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
 Frame = +3

Query: 162 QTRNTFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGVGT 341
           Q R T I+ R W  PL  +G K P++  RH VY LVEDT  + K ++ ++L Q VE VG 
Sbjct: 49  QNRGTVIVERWWKVPLAGEGRK-PRLHRRHRVYKLVEDTKHRPKENLELILTQSVENVGV 107

Query: 342 TGDVLTLHLNKAYENFILPGLAVYANPENLEKYKTYEKRPLEENTHSSPFVK---RTMDC 512
            GD++++  +      +  GLAVYA+PEN + ++  EK   +E        K    T+  
Sbjct: 108 RGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEE-EKLLRQEGKLEKIQTKAGEATVKF 166

Query: 513 LHRLVLRVTMSNSEPWTLQPWHLKASFRKS-GFVV 614
           L    L V M N+  W L P  +   F K+ G VV
Sbjct: 167 LKSCRLEVGMKNNVKWELNPEIVARHFFKNLGVVV 201


>AB049636-1|BAB40841.1|  267|Homo sapiens mitochondrial ribosomal
           protein L9 (L9mt) protein.
          Length = 267

 Score = 83.0 bits (196), Expect = 8e-16
 Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
 Frame = +3

Query: 162 QTRNTFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGVGT 341
           Q R T I+ R W  PL  +G K P++  RH VY LVEDT  + K ++ ++L Q VE VG 
Sbjct: 49  QNRGTVIVERWWKVPLAGEGRK-PRLHRRHRVYKLVEDTKHRPKENLELILTQSVENVGV 107

Query: 342 TGDVLTLHLNKAYENFILPGLAVYANPENLEKYKTYEKRPLEENTHSSPFVK---RTMDC 512
            GD++++  +      +  GLAVYA+PEN + ++  EK   +E        K    T+  
Sbjct: 108 RGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEE-EKLLRQEGKLEKIQTKAGEATVKF 166

Query: 513 LHRLVLRVTMSNSEPWTLQPWHLKASFRKS-GFVV 614
           L    L V M N+  W L P  +   F K+ G VV
Sbjct: 167 LKSCRLEVGMKNNVKWELNPEIVARHFFKNLGVVV 201


>AL589765-10|CAI17172.1|  233|Homo sapiens mitochondrial ribosomal
           protein L9 protein.
          Length = 233

 Score = 76.2 bits (179), Expect = 9e-14
 Identities = 38/94 (40%), Positives = 57/94 (60%)
 Frame = +3

Query: 162 QTRNTFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGVGT 341
           Q R T I+ R W  PL  +G K P++  RH VY LVEDT  + K ++ ++L Q VE VG 
Sbjct: 49  QNRGTVIVERWWKVPLAGEGRK-PRLHRRHRVYKLVEDTKHRPKENLELILTQSVENVGV 107

Query: 342 TGDVLTLHLNKAYENFILPGLAVYANPENLEKYK 443
            GD++++  +      +  GLAVYA+PEN + ++
Sbjct: 108 RGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFE 141


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,648,372
Number of Sequences: 237096
Number of extensions: 1867895
Number of successful extensions: 3661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3657
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)