Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k11f
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical...    68   5e-12
Z82272-1|CAB05218.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical ...    28   4.6  

>AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical
           protein B0205.11 protein.
          Length = 276

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
 Frame = +3

Query: 159 QQTRNTFILRRRWPPPLHKKGG--KVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEG 332
           Q +RNT++LRR + P +   GG  K P     +  Y++VE  + K    I ++L Q VEG
Sbjct: 17  QASRNTWVLRRVFQPEVTPPGGVQKNPNDFHDYQKYEVVEFETQKSAGPINVILLQDVEG 76

Query: 333 VGTTGDVLTLHLNKAYENFILPGLAVYANPENLEKYKTYEKRPLEE--NTHSSPF-VKRT 503
           +G   DV+++    A ++ +L   AVYA+P +L+ Y   + R  EE  +    P+ +K  
Sbjct: 77  IGHQFDVVSVDRTLARKDLLLSKKAVYASPFDLKYYSDMKTRMAEELASRIRIPYELKVV 136

Query: 504 MDCLHRLVLRVTMSNSEPWTLQPWHLKASFRKSGFVV 614
              L ++V+ + ++    WT+    +K+S R+ G  V
Sbjct: 137 GRDLQKMVIPIKVNMENQWTIDRNLVKSSLRQMGVFV 173



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +3

Query: 312 LNQFVEGVGTTGDVLTLHLNKAYENFILPGLAVYANPENLEKYKTYEKRPLEENTHSSP 488
           L++FV+ +       T  L + ++  + P   V  NP +   Y+ YE    E    + P
Sbjct: 7   LHRFVQHINRQASRNTWVLRRVFQPEVTPPGGVQKNPNDFHDYQKYEVVEFETQKSAGP 65


>Z82272-1|CAB05218.1|  341|Caenorhabditis elegans Hypothetical
           protein F55G11.2 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 315 NQFVEGVGTTGDVLTLHLNKAYENFILP-GLAVYANPENLEKY 440
           +QFV  VGTTG V+      +   F +P GL + + PE+L+ Y
Sbjct: 137 SQFVGLVGTTGLVVNATETVSAMGFYIPGGLTLLSFPEDLKNY 179


>AC024799-5|AAO25979.1|  474|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8b protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 126 KSAIIVPTMFSQQTRN-TFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPD- 299
           K A+++P +F+ Q RN   I R R    LHK   +  K+  + F  D++ D S +K  + 
Sbjct: 392 KPAVVIP-VFADQIRNANMIARHRGVIYLHKNSMENVKVTRKAFT-DVLFDDSYQKNAEK 449

Query: 300 -IRIVLNQ 320
              I++NQ
Sbjct: 450 LANILMNQ 457


>AC024799-4|AAK72318.1|  536|Caenorhabditis elegans Hypothetical
           protein Y49C4A.8a protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 126 KSAIIVPTMFSQQTRN-TFILRRRWPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPD- 299
           K A+++P +F+ Q RN   I R R    LHK   +  K+  + F  D++ D S +K  + 
Sbjct: 392 KPAVVIP-VFADQIRNANMIARHRGVIYLHKNSMENVKVTRKAFT-DVLFDDSYQKNAEK 449

Query: 300 -IRIVLNQ 320
              I++NQ
Sbjct: 450 LANILMNQ 457


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,297
Number of Sequences: 27780
Number of extensions: 300614
Number of successful extensions: 827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)