Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k11f
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20420.1 68416.m02586 ribonuclease III family protein similar... 33 0.11
At1g79120.1 68414.m09226 hypothetical protein 29 1.9
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 28 4.3
At1g27720.1 68414.m03388 transcription initiation factor IID (TF... 28 4.3
At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2) ... 28 5.7
At5g22660.1 68418.m02648 F-box family protein contains F-box dom... 27 7.5
At3g04450.1 68416.m00472 myb family transcription factor contain... 27 7.5
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 27 7.5
At1g11600.1 68414.m01332 cytochrome P450, putative similar to cy... 27 7.5
At2g11000.1 68415.m01176 natC N(alpha)-terminal acetyltransferas... 27 10.0
At2g10608.1 68415.m01121 hypothetical protein 27 10.0
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 10.0
>At3g20420.1 68416.m02586 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles: PF00636
RNase3 domain, PF00035 Double-stranded RNA binding motif
Length = 391
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/72 (18%), Positives = 37/72 (51%)
Frame = +3
Query: 42 NRILLDIISINHSLEKKTKMFGLRASVMKSAIIVPTMFSQQTRNTFILRRRWPPPLHKKG 221
N+ + +I+ +L K +++F + + + ++ + ++ N L+++WP P++
Sbjct: 276 NKDIARLIAAKEALRKLSEVFPVEMVIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVE 335
Query: 222 GKVPKMKGRHFV 257
++G+ FV
Sbjct: 336 EDRSSVQGKRFV 347
>At1g79120.1 68414.m09226 hypothetical protein
Length = 413
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 126 KSAIIVPTMFSQQTRNTFILRRRWPPPLHKKGGKV--PKMKGRHFVYDLVEDTSVKKKPD 299
+S ++ P S + + TF+ R HK GG PK K H V+DL + + KKP
Sbjct: 26 ESFVLFPGESSSRLQWTFVQVR------HKSGGGGWRPKQKVYHRVHDLDKAIDLNKKPS 79
Query: 300 IRIVLNQFVE 329
+ + L ++
Sbjct: 80 LILQLKSIIQ 89
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 28.3 bits (60), Expect = 4.3
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = -3
Query: 469 SSRGRFS*VLYFSKFSGLAYTARPGNMKFSYALFKCSVKTSPVVPTPSTN*FKTILMSGF 290
S+ RF V FS+F+G Y+ + F+ + ++T P + F +I+ S
Sbjct: 3 STYTRFDTVFLFSRFAGAKYSPLLPSPSFTLSTSGIHIRTKP------NSRFHSIIASSS 56
Query: 289 FLTLVSSTKS-*TKCLPFILGTLP-PFL*SGGGHLRRKIKVFL 167
++V+ T S K LP T P +G LR+K+KVF+
Sbjct: 57 SSSVVAGTDSIEIKSLP----TKPIEGQKTGTSGLRKKVKVFM 95
>At1g27720.1 68414.m03388 transcription initiation factor IID
(TFIID) component TAF4 family protein contains Pfam
profile PF05236: Transcription initiation factor TFIID
component TAF4 family
Length = 682
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 63 ISINHSLEKKTKMFGLRASVMKSAIIVPTMFSQQTRNTFI 182
IS N LEK++ GL S ++ + P+M +Q +T +
Sbjct: 341 ISSNDDLEKQSSKMGLFTSTTSASSVFPSMTTQLDSSTMV 380
>At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2)
nearly identical to receptor-like serine/threonine
kinase GI:2465925 from [Arabidopsis thaliana]; intron 3
was added to circumvent a frameshift. Either a
sequencing error exists or this may be a pseudogene.
Length = 600
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -3
Query: 583 LRCQGCRVHGSELLIVTRSTNLCKQSIVLFTNGEL*VFSSRGRFS*VLYFSKFSGLAYTA 404
+R GC + G + L+V + +LF + + S + RF+ ++ S+ GL Y
Sbjct: 360 VRLLGCSIEGPKSLLVYEYVHNRSLDQILFMKNTVHILSWKQRFNIIIGISE--GLEYLH 417
Query: 403 RPGNMKFSYALFKCS 359
R +K + K S
Sbjct: 418 RGSEVKIIHRDIKTS 432
>At5g22660.1 68418.m02648 F-box family protein contains F-box domain
Pfam:PF00646
Length = 315
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 510 CLHRLVLRVTMSNSEPWTLQPW 575
CLH+L + M + WT+ PW
Sbjct: 83 CLHKLQISFQMEAVDMWTIIPW 104
>At3g04450.1 68416.m00472 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 438
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 396 PGLAVYANPENLEKYKTYEKRP-LEENTHSSPFVKRTMDCLHRLVLRVTMSNSEPWTLQ 569
PGL VY +L+KY+T +P L ++T + +T++ + L L+ ++ +E LQ
Sbjct: 276 PGLTVYHVKSHLQKYRTARYKPELSKDTVKN---LKTIEDIKSLDLKTSIEITEALRLQ 331
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 3/23 (13%)
Frame = +1
Query: 400 VLLCMP---IQKIWKNIKPMKNV 459
V LCMP ++K+W+ I+P++N+
Sbjct: 677 VKLCMPYSKLEKLWEGIQPLRNL 699
>At1g11600.1 68414.m01332 cytochrome P450, putative similar to
cytochrome P450 77A2 (CYPLXXVIIA2) (P-450EG5) [Solanum
melongena] and cytochrome P450 77A3 (SP:O48928) [Glycine
max]; is a member of the PF|00067 Cytochrome P450
family. ESTs gb|Z30775 and gb|Z30776 come from this gene
Length = 510
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 97 FVFFSSEWLILIISNKILLHNGRKVSEEKIKN 2
FV S+ + I S I L G K+SEEKIKN
Sbjct: 175 FVEVMSQCRLTICSILICLCFGAKISEEKIKN 206
>At2g11000.1 68415.m01176 natC N(alpha)-terminal acetyltransferase,
Mak10 subunit family protein contains Pfam PF04112:
Mak10 subunit, NatC N(alpha)-terminal acetyltransferase;
similar to corneal wound healing related protein
(GI:8926320) [Rattus norvegicus]; weak similarity to
Glucose repressible protein MAK10 (Swiss-Prot:Q02197)
[Saccharomyces cerevisiae]
Length = 695
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 9 IFSSDTFLPLCNRILLDIISINHSLEKKTKMFGLRASVMKSAIIVPTMFSQQT 167
++ DTFL +C R L +S NH L T + L+ + M I V M Q T
Sbjct: 401 LYGRDTFLTICARSLALDVSKNHGLH--TNEYILQLNQM--GIAVGQMMQQDT 449
>At2g10608.1 68415.m01121 hypothetical protein
Length = 135
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 555 PWTLQPWHLKASFRKSGFVV 614
PW PW ++A+F SGF +
Sbjct: 107 PWWGSPWGIEAAFGLSGFAI 126
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory / CAF
identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +3
Query: 153 FSQQTRNTFILRRRWPPPLH---KKGG 224
F++QT N LR+ WP P + K+GG
Sbjct: 1831 FTRQTLNDICLRKNWPMPSYRCVKEGG 1857
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,214
Number of Sequences: 28952
Number of extensions: 267223
Number of successful extensions: 756
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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