SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k10r
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62680.1 68416.m07041 proline-rich family protein contains pr...    29   3.8  
At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    29   3.8  
At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    28   5.0  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    28   5.0  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   6.6  
At5g44400.1 68418.m05436 FAD-binding domain-containing protein s...    27   8.7  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    27   8.7  
At1g31750.1 68414.m03895 proline-rich family protein contains pr...    27   8.7  

>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/87 (25%), Positives = 29/87 (33%)
 Frame = -3

Query: 349 PDPGFSRPVIGQPGYVPISTGPAYVXXXXXXXXXXXNGYEPIDNRPYIVNPPKDYNPNGN 170
           P P ++ PV       P+ T P                  P+  +P I  PP  Y P   
Sbjct: 67  PPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTI--PPPVYTPPVY 124

Query: 169 GYEPIDNGAYYVDPPQGRPYFKPTPFP 89
              P+        P    P +KPTP P
Sbjct: 125 KPTPVYTKPTIPPPVYTPPVYKPTPSP 151


>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 214 PYIVN--PPKDYNPNGNG-YEPIDNGAYYVDPPQGRPYFKPTPFP 89
           PY+ N  PP  Y+P+    Y+       Y  PP   PY+ PTP P
Sbjct: 612 PYVYNSPPPPYYSPSPKPTYKSPPPPYVYSSPPP--PYYSPTPKP 654


>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 190 DYNP-NGNGYEPIDNGAYYVDPPQGR 116
           +Y+P NG  Y P   G +Y  PPQG+
Sbjct: 530 NYSPQNGGHYGPAQFGQWYPGPPQGQ 555


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 190 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 89
           DY P+   Y+P  N   Y  PP    Y +P  +P
Sbjct: 101 DYQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYP 134


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 199 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 89
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


>At5g44400.1 68418.m05436 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 537

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +2

Query: 29  LIHYFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFVAVSIRVVIFGRIND 208
           L    V+ F  Y++ PT+S        +       HV   +   F A +  V +F ++ +
Sbjct: 9   LFSILVLYFSLYTITPTSSLASLQDQFINCVQRNTHVYFPLEKTFFAPTKNVSMFSQVLE 68

Query: 209 VRAVVNRFVAVSWPL-GSVVGPVY 277
             A   RF+  S P  G +  P++
Sbjct: 69  STAQNLRFLKKSMPKPGFIFSPIH 92


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
 Frame = -3

Query: 373 PGHVLISNPDPGFSRP----VIGQPGYVPISTGPAYVXXXXXXXXXXXNGYEPIDNRPYI 206
           P +V  S P   +S P    V   P YV  S  P                Y      PY+
Sbjct: 84  PPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYV 143

Query: 205 VN--PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 92
            +  PP  Y+P    Y P  +   Y  PP    Y  P P+
Sbjct: 144 YSSPPPYAYSPPPYAYSPPPSPYVYKSPPY--VYSSPPPY 181


>At1g31750.1 68414.m03895 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 199 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 77
           PP+ Y P  +GY P    A Y  PP   P   P  +PG  G
Sbjct: 44  PPQGYPPPPHGYPP----AAYPPPPGAYP---PAGYPGPSG 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,959,857
Number of Sequences: 28952
Number of extensions: 316153
Number of successful extensions: 859
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -