Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k10f
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 29 0.69
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.91
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 27 2.1
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.7
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.7
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 3.7
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 26 4.8
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 25 6.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 6.4
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 8.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 8.5
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 8.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 8.5
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 28.7 bits (61), Expect = 0.69
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 156 LALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHVN 284
LAL+A+A V + +DAK+R+ + D+N+ G V+
Sbjct: 164 LALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVS 206
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 486 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFRPTPFPG 590
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 207 NADSVRDAKKRYGVNVVDNNNPGHVNVVDNNHPGHVLISNPDPGF 341
N+ S+ KK NV NNN N ++HP + +N G+
Sbjct: 69 NSPSIMKNKK----NVTPNNNIRQKNTATSSHPSFYIANNKQKGY 109
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 430 QETATNLLTTARTSLILPKI---TTLMETATNLSTTVHITWTLPKADLTSG 573
+ T+T +TT+ S P I T T T +S + T T+P +TSG
Sbjct: 65 ESTSTKSITTSTQSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSG 115
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 409 PTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWT 546
P+T T T+ T+ +P T+L T T T H+ T
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNST 118
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 430 QETATNLLTTARTSLILPKI---TTLMETATNLSTTVHITWTLPKADLTSG 573
+ T+T +TT+ S P I T T T +S + T T+P +TSG
Sbjct: 65 ESTSTKSITTSTQSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSG 115
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 374 HVSGLTDYGPRKARIRVRDENV 309
+V+GL DY PR R D+NV
Sbjct: 108 YVAGLQDYAPRSMRDNDWDDNV 129
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 480 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFRPT 578
PK PN N +P NG + PP Y +PT
Sbjct: 46 PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 240 YGVNVVDNNNPGHVNVVDNNHPGHV 314
YGV+V DN N + V H HV
Sbjct: 306 YGVHVYDNGNITSIVAVSGTHGTHV 330
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 412 TTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSGLPLS 585
TT P + T T ++ T T + + TT+ + T + T T P + T+ LP++
Sbjct: 99 TTIPTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -2
Query: 491 VIFG--RINDVRAVVNRFVAVSW 429
V+FG R+ DV +N+FV V W
Sbjct: 64 VLFGFLRVKDVNTGLNKFVLVCW 86
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 483 KDYNPNGNGYEPIDNGAYYVDPPQGRP 563
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 243 GVNVVDNNNPGHVNVVDNNHPGHVLISNPDPGFS 344
G N++ PG+ N+P +LI+ + GF+
Sbjct: 862 GGNIIPLQQPGYTTYESRNNPYSLLIAMDNNGFA 895
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,982
Number of Sequences: 5004
Number of extensions: 49059
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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