Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k10f
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       36   0.019
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           34   0.076
04_04_0924 - 29449285-29449290,29449386-29449575,29449669-294497...    34   0.100
10_08_0681 + 19855134-19855454                                         33   0.13 
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    29   2.2  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   2.8  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   3.8  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
 Frame = +3

Query: 321 SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXXGYEPIDNRPYIVNPPK 485
           SN D GF      G PG  P+  G    P                Y P    P    PP 
Sbjct: 11  SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70

Query: 486 DYNPNGNGYEPIDNGAYYVDPPQG---RPYFRPTPFPG 590
            Y P+  GY P   GAY   PP G   +P + P  +PG
Sbjct: 71  GYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 441 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFRPTPFPGARG 599
           Y P  + P  V PP  Y P  +G  P     N + Y +PP GRP   P P  GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>04_04_0924 -
           29449285-29449290,29449386-29449575,29449669-29449772,
           29449845-29449976,29450064-29450162,29450439-29450451,
           29450688-29450719,29450802-29450921,29450992-29451105,
           29451192-29451325,29454014-29454251
          Length = 393

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 159 ALLAMANAQDPVKVVENADSVRDAKKRYGVNV-VDNNNPGHVNVVDNNHPGHVLISNPD 332
           AL+ +  A+  V V  + D V   +KR  VN+  ++N+    ++  +NH G V +SN D
Sbjct: 60  ALVVLKEARAAVAVERDEDEVMGHRKRSKVNISSESNSDNDCSLSSDNHDGDVHLSNHD 118


>10_08_0681 + 19855134-19855454
          Length = 106

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 23/80 (28%), Positives = 38/80 (47%)
 Frame = +3

Query: 99  IPFLINHCVDKPDFL*IFVLALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGH 278
           +  L+   V+K + + +   A LA A   + + VVE  +++     R G   +   NP H
Sbjct: 25  VALLLVGSVEKEEEVVVVRGARLAAARPCEEIYVVEEGETLHSISDRCGDPYILEQNP-H 83

Query: 279 VNVVDNNHPGHVLISNPDPG 338
           V+  D+  PG V+   P PG
Sbjct: 84  VHDPDDVFPGLVIKITPRPG 103


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 459 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFRP 575
           +PY   P   P    P G  Y P   G  Y  PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 447 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFRPTPFP 587
           P  + P IV  P  Y P+   YEP     Y  +PP   PY  P  FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +3

Query: 474 NPPK-----DYNPNGNGYEPIDNGAYYVDPPQGRPYFRPTPFP 587
           NPP+     D  P+   Y+P  +  YY DPP    Y+ P P P
Sbjct: 37  NPPESPDHEDPPPSPEYYDPPPSPDYY-DPPHSPDYYDPPPSP 78



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 486 DYNPNGNGYEPIDNGAYYVDPPQGRPYFRPTPFP 587
           D  P+ + Y+P  +  YY DPP    Y+ P P P
Sbjct: 55  DPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPSP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,852
Number of Sequences: 37544
Number of extensions: 345832
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)