Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10k10f
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19623| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_7058| Best HMM Match : Collagen (HMM E-Value=0.018) 37 0.014
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 31 0.94
SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9) 30 1.2
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 30 1.2
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) 30 1.2
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) 30 1.2
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 29 3.8
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 29 3.8
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 27 8.8
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_28023| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-37) 27 8.8
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_19623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 249 NVVDNNNPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAY 398
+V+ +PG V ++ + PGHV+I DPG +IG PGYV I P Y
Sbjct: 68 HVIIIGDPGDVMIIGD--PGHVMIIG-DPGHMM-IIGDPGYVMIIGDPGY 113
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +3
Query: 249 NVVDNNNPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYV 401
+V+ +PG V ++ + PGHV+I DPG +IG PGYV I P ++
Sbjct: 122 HVIIIGDPGDVMIIGD--PGHVMIIG-DPGHMM-IIGDPGYVMIIGDPGHL 168
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 240 YGVNVVDNNNPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYV 401
YG+ + D PGHV ++ + PG V+I DPG +IG PG++ I P YV
Sbjct: 59 YGMIIGD---PGHVIIIGD--PGDVMIIG-DPGHVM-IIGDPGHMMIIGDPGYV 105
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 240 YGVNVVDNNNPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYV 401
YG+ + D PGHV ++ + PG V+I DPG +IG PG++ I P YV
Sbjct: 113 YGMIIGD---PGHVIIIGD--PGDVMIIG-DPGHVM-IIGDPGHMMIIGDPGYV 159
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 267 NPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAY 398
+PGH+ ++ + PGHV+I DP +IG PG+V I P Y
Sbjct: 20 DPGHMIIIGD--PGHVMIIG-DPDHLM-IIGDPGHVMIIGDPGY 59
>SB_7058| Best HMM Match : Collagen (HMM E-Value=0.018)
Length = 188
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 249 NVVDNNNPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAY 398
+V+ +PG V ++ + PGHV+I DPG +IG PGYV I P Y
Sbjct: 62 HVIIIGDPGDVMIIGD--PGHVMIIG-DPGHMM-IIGDPGYVMIIGDPGY 107
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +3
Query: 249 NVVDNNNPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYV 401
+V+ +PG V ++ + PGHV+I DPG +IG PGYV I P ++
Sbjct: 116 HVIIIGDPGDVMIIGD--PGHVMIIG-DPGHMM-IIGDPGYVMIIGDPGHL 162
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 240 YGVNVVDNNNPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYV 401
YG+ + D PGHV ++ + PG V+I DPG +IG PG++ I P YV
Sbjct: 53 YGMIIGD---PGHVIIIGD--PGDVMIIG-DPGHVM-IIGDPGHMMIIGDPGYV 99
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 240 YGVNVVDNNNPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYV 401
YG+ + D PGHV ++ + PG V+I DPG +IG PG++ I P YV
Sbjct: 107 YGMIIGD---PGHVIIIGD--PGDVMIIG-DPGHVM-IIGDPGHMMIIGDPGYV 153
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 267 NPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAY 398
+PGH+ ++ + PGHV+I DP +IG PG+V I P Y
Sbjct: 14 DPGHMIIIGD--PGHVMIIG-DPDHLM-IIGDPGHVMIIGDPGY 53
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 30.7 bits (66), Expect = 0.94
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 391 LRT*TGPTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 570
L T P T + T T A + + PK TT +ET TTV + T P + TS
Sbjct: 755 LETSIVPETTAASETTVAPETTDAPATTLAPKTTTALETTVAAKTTV-VPETTPALETTS 813
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 409 PTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 570
P T + T T A + + PK TT +ET TTV + T P + TS
Sbjct: 2276 PETTAAPETTVAPETTDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTS 2328
>SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9)
Length = 678
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 451 LTTARTSLILPKITT--LMETATNLSTTVHITWTLPKADLTSGLPLSLVLAV 600
L T T+L L ITT L+ T + V IT TLP +T+ LPL ++ +
Sbjct: 282 LVTITTTLPLVVITTILLLVVITTILPLVAITTTLPLVAITTILPLVVITTI 333
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 436 TATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSGLPLSLVLAV 600
T T L T L L ITT++ T + V IT TLP +T+ LPL + +
Sbjct: 619 TTTLPLVVITTILPLVAITTILPLVAITTILPLVVITTTLPLVTITTILPLVAITTI 675
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 409 PTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 570
P T + T T A + + PK TT +ET TTV + T P + TS
Sbjct: 214 PETTAAPETTVAPETTDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTS 266
>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
Length = 1165
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 436 TATNLLTTARTSLILPKITTLMETA--TNLSTTVHITWTLPKADLTSGLPLSLVLAV 600
T T L T L L ITTL+ T + V IT TLP +T+ LPL ++ +
Sbjct: 541 TTTLPLVVITTILPLVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTI 597
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +3
Query: 441 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY--YVDPPQGRPYFRPTPFP 587
Y P N PY P Y P N Y P N Y +PP P + P P P
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +3
Query: 441 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY----YVDPPQGRPYFRPTPFP 587
Y P N PY P Y P+ N Y P N Y Y PP P P P P
Sbjct: 124 YPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPP 177
>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
Length = 447
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Frame = +3
Query: 276 HVNVVDNNHPGHVLISNPDPGFSRPVI-GQPGY-VPISTG-PAYVXXXXXXXXXXXXGYE 446
H+ +D + G P ++ P+ GQP Y P TG P Y G
Sbjct: 267 HITYLDKSDTGPSFSGQPP--YNNPLFTGQPPYNAPPFTGQPPY-------NAPPFNGQP 317
Query: 447 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFRPTPFPG 590
P + P+ PP Y P NG +P+ Y+ P G+P + PF G
Sbjct: 318 PYNTPPFNGQPPY-YTPPFNG-QPL----YHTPPFNGQPPYNTPPFNG 359
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 397 T*TGPTTDPKGQETATNLLTTARTSLILPKITTLME-TATNLSTTVHITWTLPKADLTS 570
T T P + T +L+TTA + +TT E T +L+TT + T P+ S
Sbjct: 156 TTTAPEATTAPETTTASLVTTAPETTTASLVTTAPEATTASLATTASLATTAPETTTAS 214
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 412 TTDPKGQETATNLLTTARTSLILPKITTLMETAT-NLSTTVHITWTLPKA 558
TT P+ T +L+TTA + +TT ET T +L+TT T P+A
Sbjct: 656 TTAPEA--TTASLVTTAPEATTASLLTTAPETTTASLATTAPEATTAPEA 703
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 397 T*TGPTTDPK-GQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 570
T T TT+ K T+T++LTT T + TT+ TAT TT T ++TS
Sbjct: 2051 TKTHATTETKVSTATSTSVLTTTNTHHVTSTSTTV-STATKTETTTATHHTTKLEEITS 2108
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 436 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 549
T TN++TTA T+ I+T+ T T +T + I T+
Sbjct: 297 TNTNIITTATTTTTSTTISTITVTITTTTTIIIIVITI 334
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 383 TYWHVSGLTDYGPRKARIRVRDENVTRMV 297
TY+ G D+GPR AR+ D++V + V
Sbjct: 979 TYFIKKGKWDFGPRNARLYKEDDSVYKRV 1007
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 439 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTS 570
AT +TT ++ P TT TAT +TT T T P A T+
Sbjct: 96 ATATITTYTATVTAPNATTTTPTATTTTTTT-TTTTTPYATTTT 138
>SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 436 TATNLLTTARTSLILPKITTLMETATNLSTTVH--ITWTLPKADLTSGLPLSLV 591
T + ++TT + +I ITT+ + T L+TT+ I LP TS PL ++
Sbjct: 20 TISQIITTL-SRIITDPITTISQIITTLATTISQIIRTPLPIITTTSRTPLRII 72
>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 566 VRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVAVS 432
VR + R VV R S+RVV+ + VR V+ R+VA++
Sbjct: 772 VRVVMRRYVTSVRVVMRRYVASVRVVMPRYVASVRVVMRRYVAIA 816
>SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 147 IFVLALLAMANAQDPVKVVENADSVRDAKKRYG 245
I V L+++ + P + VENA D +KRYG
Sbjct: 110 IVVRYLVSIDRKKGPAEAVENAQLAVDYRKRYG 142
>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
Length = 1183
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 219 VRDAKKRYGVNVVDNN-NPGHVNVVDNNHPGHVLISNPDPGFSRPVIGQPGYVPISTG-P 392
V + R G +V +P HV ++ P HV S P +G P +V S G P
Sbjct: 624 VTSSNHRVGNHVTQRTGSPSHVTQRADS-PSHVTQSAGSPSHGTQTVGNPSHVTQSAGSP 682
Query: 393 AYV 401
++V
Sbjct: 683 SHV 685
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +1
Query: 394 RT*TGPTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKAD 561
+T P T + TATN TA +PK TT ET TTV T D
Sbjct: 343 KTTAAPETTSVPETTATN---TAPDKTAVPKTTTAPETTDASKTTVETQQTTYSRD 395
>SB_28023| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-37)
Length = 347
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -2
Query: 452 NRFVAVSWPLGSVVGPVYVRRSSTYWHVSGLTDYGPRKARIRVRDENVTRMVIVDHVNVS 273
+RFVAV +PL + V + T W + Y P ++ DE V+H+ +
Sbjct: 126 DRFVAVVFPLWKLTSKTRVILNMTTW-IIACAFYSPYFHGFKIVDEQCILFWGVNHITFN 184
Query: 272 RIIIIDDVHTVTF 234
+ + V+ VTF
Sbjct: 185 TVYWM--VNAVTF 195
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = +3
Query: 204 ENADSVRD---AKKRYGVNVVDNNNPGHVNVVDNNHPGHVLISNPDPGFS--RPVIGQPG 368
+N D V D K + +++V PG H G+ + P PG P GQ G
Sbjct: 199 DNDDDVNDHDDVKVNFNLHIVGYGPPGQQPGSPGQHQGYGTLPGPPPGQQGYGPPPGQQG 258
Query: 369 Y 371
Y
Sbjct: 259 Y 259
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,048,447
Number of Sequences: 59808
Number of extensions: 394760
Number of successful extensions: 1528
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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