Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k10f
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.0  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   7.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 472 LILPKITTLMETATNLSTTVHI-TWTLP 552
           L+LPK+T  +E    L+ TV I TW  P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHP 545


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 269 IIIIDDVHTVTFFRVTN*VSVFHYLNWVLSVGHS 168
           +II+DD H   F  + N    FH L ++   G S
Sbjct: 468 VIILDDEHDDAFIGIVN---QFHILQFITKNGTS 498


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 530  CILRGPSPRPTLLQA 574
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = +3

Query: 183 QDPVKVVENADSVRDAKKRYGVNVVDNNNPGHVNVVDNN 299
           +D    +    S+  AK      ++++ N G +N+ D N
Sbjct: 20  KDFQNAIRMGQSICMAKTGINKQIINDVNDGKINIEDEN 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,403
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)