Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k10f
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    28   4.1  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    28   5.4  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    27   7.2  
At1g31750.1 68414.m03895 proline-rich family protein contains pr...    27   7.2  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    27   7.2  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    27   9.5  
At3g42460.1 68416.m04398 hypothetical protein several hypothetic...    27   9.5  
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik...    27   9.5  

>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 486 DYNP-NGNGYEPIDNGAYYVDPPQGR 560
           +Y+P NG  Y P   G +Y  PPQG+
Sbjct: 530 NYSPQNGGHYGPAQFGQWYPGPPQGQ 555


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 486 DYNPNGNGYEPIDNGAYYVDPPQGRPYFRPTPFP 587
           DY P+   Y+P  N   Y  PP    Y  P  +P
Sbjct: 101 DYQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYP 134


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/87 (24%), Positives = 29/87 (33%)
 Frame = +3

Query: 327 PDPGFSRPVIGQPGYVPISTGPAYVXXXXXXXXXXXXGYEPIDNRPYIVNPPKDYNPNGN 506
           P P ++ PV       P+ T P                  P+  +P I  PP  Y P   
Sbjct: 67  PPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTI--PPPVYTPPVY 124

Query: 507 GYEPIDNGAYYVDPPQGRPYFRPTPFP 587
              P+        P    P ++PTP P
Sbjct: 125 KPTPVYTKPTIPPPVYTPPVYKPTPSP 151


>At1g31750.1 68414.m03895 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 477 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFRPTPFPGARG 599
           PP+ Y P  +GY P    A Y  PP   P   P  +PG  G
Sbjct: 44  PPQGYPPPPHGYPP----AAYPPPPGAYP---PAGYPGPSG 77


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 477 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFRPTPFP 587
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
 Frame = +3

Query: 303 PGHVLISNPDPGFSRP----VIGQPGYVPISTGPAYVXXXXXXXXXXXXGYEPIDNRPYI 470
           P +V  S P   +S P    V   P YV  S  P                Y      PY+
Sbjct: 84  PPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSPPPSPYVYKSPPYVYSSPPPYV 143

Query: 471 VN--PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFRPTPF 584
            +  PP  Y+P    Y P  +   Y  PP    Y  P P+
Sbjct: 144 YSSPPPYAYSPPPYAYSPPPSPYVYKSPPY--VYSSPPPY 181


>At3g42460.1 68416.m04398 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 202

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 195 KVVENADSVRDAKKRYGVNVVD 260
           KV+ N+D V+     YG+N++D
Sbjct: 50  KVIPNSDPVKTTSAEYGINLMD 71


>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
           protein, putative similar to cold-regulated gene SRC2
           [Glycine max] GI:2055230; contains Pfam profile PF00168:
           C2 domain; identical to cDNA  src2-like protein
           GI:3426059
          Length = 324

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +3

Query: 477 PPKDYNPNGN--GYEPIDNGAYYVDPPQGRPYFRP 575
           PP  Y   G   GY P   G Y   PPQG PY  P
Sbjct: 217 PPGAYPQQGGYPGYPPQQQGGYPGYPPQG-PYGYP 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,345
Number of Sequences: 28952
Number of extensions: 274030
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)