Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k09r
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...   159   5e-40
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   3.7  
SPBP22H7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.5  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  159 bits (385), Expect = 5e-40
 Identities = 81/133 (60%), Positives = 95/133 (71%)
 Frame = -2

Query: 588 RLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPRSGLA 409
           +LSE A  P +GS  +AG DL +A +  VP RGK LV TDL I +P G YGRVAPRSGLA
Sbjct: 7   KLSEKATIPTKGSANSAGYDLYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRVAPRSGLA 66

Query: 408 LKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLS 229
            K+ ID GAGVID DYRG+V V+LFN+SD DF +K GDRIAQLI E+I  P +  V +L 
Sbjct: 67  SKHSIDTGAGVIDADYRGHVRVLLFNYSDVDFPIKVGDRIAQLILERIVNPPVILVESLE 126

Query: 228 VTQRGDGGFGSTG 190
            T RG  GFGSTG
Sbjct: 127 ATVRGANGFGSTG 139


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 191 PVEPNPPSPL*VTDKLATSCNTG 259
           PVEP+PPSP  +   + TS +TG
Sbjct: 230 PVEPDPPSPEEICCIMYTSGSTG 252


>SPBP22H7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 181

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 273 EKIYYPVLQEVANLSVTQRGDGGFGSTGKK*KIES 169
           EK Y P   E+A+  +T   +  FGS      +ES
Sbjct: 71  EKKYSPYTDEIASAQLTGPSESAFGSASSLGTVES 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,393
Number of Sequences: 5004
Number of extensions: 52763
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)