Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k09r
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)                   83   2e-16
SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)                 80   2e-15
SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)                80   2e-15
SB_24792| Best HMM Match : 7tm_1 (HMM E-Value=8.7e-09)                 30   2.3  
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)                29   5.3  
SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)                  29   5.3  
SB_59608| Best HMM Match : DiS_P_DiS (HMM E-Value=8.5)                 28   7.0  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    28   7.0  
SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)                 28   7.0  
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 28   9.2  
SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)                 28   9.2  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 28   9.2  
SB_28848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)
          Length = 90

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 36/66 (54%), Positives = 48/66 (72%)
 Frame = -2

Query: 615 KIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYG 436
           + + +L F +L++    P RGS  AAG DL SAYD ++PA+GK LVKTD+ + +P GCYG
Sbjct: 20  RAETVLYFKKLTKLGLPPTRGSSHAAGYDLYSAYDVSIPAQGKALVKTDIAVAIPDGCYG 79

Query: 435 RVAPRS 418
           RVAPRS
Sbjct: 80  RVAPRS 85


>SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)
          Length = 62

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 40/60 (66%), Positives = 46/60 (76%)
 Frame = -2

Query: 420 SGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 241
           S LA K+ IDVGAGVID DYRGNVGVVLFN   + + VK+GDRIAQLI E+I  P + EV
Sbjct: 2   SSLAWKHQIDVGAGVIDRDYRGNVGVVLFNLGSSAYEVKQGDRIAQLIVERIQTPSIVEV 61


>SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)
          Length = 103

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 40/60 (66%), Positives = 46/60 (76%)
 Frame = -2

Query: 420 SGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 241
           S LA K+ IDVGAGVID DYRGNVGVVLFN   + + VK+GDRIAQLI E+I  P + EV
Sbjct: 2   SSLAWKHQIDVGAGVIDRDYRGNVGVVLFNLGSSAYEVKQGDRIAQLIVERIQTPSVVEV 61


>SB_24792| Best HMM Match : 7tm_1 (HMM E-Value=8.7e-09)
          Length = 303

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -2

Query: 414 LALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 241
           +AL N + +G  +I++  R      LFN + TDF    G  +A LIC+ I    + EV
Sbjct: 32  VALCNILVIGTFIINQHLRKKSMYFLFNLALTDFLF--GATVAPLICQVISTSNVDEV 87


>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
          Length = 607

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 232 QISNFL*HRIVDLLTNKLCNSVSFFHT-KICVRVIKKNNSNITSIVLINNTGTNINEI 402
           +++N + +++ + +TNK+ N V+   T K+   V  K N+N+T+ V  N T    N++
Sbjct: 220 KVTNNVTNKVTNEVTNKVNNKVTNKVTKKVTNNVTNKVNNNVTNKVTNNVTNKVTNKV 277


>SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)
          Length = 608

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 402 SSELNQIEVLLYHNTQAVVLFVGQFSLILCLEQEQCNHMHSL 527
           S  L   E +LY N +   L +  F+  LCL QE C  ++ L
Sbjct: 350 SFALETFESILYKNPKLENLVIEAFARRLCLNQESCPCLNML 391


>SB_59608| Best HMM Match : DiS_P_DiS (HMM E-Value=8.5)
          Length = 370

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = +3

Query: 363 SPXXXXXXXXXXNSSELNQIEVLLYHNTQAVVLFVGQFSLILCLEQEQCNHMHSLNRSQL 542
           SP          N+S  +QI  L  HN +       + +  LC  Q  C+  + LN  Q 
Sbjct: 172 SPSSHSNSASENNNSASSQINAL-DHNIRKCDSLFQELNSYLCKYQSDCSESNDLNAKQK 230

Query: 543 LFQSL 557
           L   L
Sbjct: 231 LLCKL 235


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 277 NKLCNSVSFFHTKICVRVIKKNNSNITSIVLINNTGTNINEILQS 411
           NK+ N+    +    + VI  NN+N   IV+I+NT T+  +  Q+
Sbjct: 624 NKIINNYDIIYNNDTI-VIDSNNNNDIIIVIISNTTTSCQQQQQN 667


>SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)
          Length = 986

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 175 YFLFFSSGAKSTITPLSYRQISNFL*HRIVDLLTNKLCNSVSFFHTKICVR-VIKKNNSN 351
           Y +FF+S   + ITP +Y  +++ L H ++ L+T  L  + +  H ++  R  + K N N
Sbjct: 736 YSIFFASNQFANITPSAY-NMADILLHHLLPLVTVPL--AYALIHRRLTKRKTVLKINKN 792


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 304 FHTKICVRVIKKNNSNITSIVLINNTGTNINE 399
           FH  +  + IK    N T++ LINN GT  N+
Sbjct: 294 FHASLAGKHIKLMIDNTTAVALINNMGTCHNK 325


>SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)
          Length = 318

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 304 FHTKICVRVIKKNNSNITSIVLINNTGTNINE 399
           FH  +  + IK    N T++ LINN GT  N+
Sbjct: 97  FHASLAGKHIKLMIDNTTAVALINNMGTCHNK 128


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 304 FHTKICVRVIKKNNSNITSIVLINNTGTNINE 399
           FH  +  + IK    N T++ LINN GT  N+
Sbjct: 294 FHASLAGKHIKLMIDNTTAVALINNMGTCHNK 325


>SB_28848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 375 IDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEK-IYYPVLQEV--ANLSVTQRGDGG 205
           + ED+   +     N + T+  V   D + +    K  +YP+  +   ANL   + G GG
Sbjct: 56  VKEDFEKFIMPGASNPAGTELEVVVMDWLGRYASFKQAFYPLSHKARHANLVTQREGGGG 115

Query: 204 FGSTGKK 184
            GSTG K
Sbjct: 116 EGSTGPK 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,399
Number of Sequences: 59808
Number of extensions: 363703
Number of successful extensions: 746
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)