BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10k09r (745 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido... 182 2e-46 At5g55820.1 68418.m06956 expressed protein 28 7.5 At1g61970.1 68414.m06990 mitochondrial transcription termination... 27 9.9 >At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotidohydrolase family contains Pfam profile: PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase Length = 166 Score = 182 bits (444), Expect = 2e-46 Identities = 92/139 (66%), Positives = 101/139 (72%) Frame = -2 Query: 606 PILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVA 427 P K +LSE A P RGS +AG DL SA D VPARGK L+ TDL I +P G Y R+A Sbjct: 27 PFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPARGKALIPTDLSIAVPEGTYARIA 86 Query: 426 PRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQ 247 PRSGLA K+ IDVGAGVID DYRG VGV+LFNHSD DF VK GDRIAQLI EKI P + Sbjct: 87 PRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDADFEVKFGDRIAQLIIEKIVTPDVV 146 Query: 246 EVANLSVTQRGDGGFGSTG 190 EV +L T RGDGGFGSTG Sbjct: 147 EVDDLDETVRGDGGFGSTG 165 >At5g55820.1 68418.m06956 expressed protein Length = 1826 Score = 27.9 bits (59), Expect = 7.5 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = -2 Query: 621 SGKIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGC 442 S ++QP+ T + N + +++ I+ SA DY + G D Q+E+ G Sbjct: 719 SKEVQPLGSLTEVGSNQSHGIISRARSSLIEEESANDYKALSDGSNHKSADKQLEVREGN 778 Query: 441 YGRVAPRSGLALKNFIDV 388 P + + NF +V Sbjct: 779 SLLRTPDRPVFVDNFDEV 796 >At1g61970.1 68414.m06990 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF Length = 418 Score = 27.5 bits (58), Expect = 9.9 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%) Frame = +1 Query: 184 FFSSGAKSTITPLSYRQISNFL*HRIVDL--LTNKLCNSVSFFHTKICVRVIKKNNSNIT 357 FFSS + + ++P R+ +NF +VD LT KL S+S K+ KNN + Sbjct: 33 FFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESIS---RKVSFE--DKNNPDSV 87 Query: 358 SIVLINN--TGTNINEILQ 408 +L ++ TG+ I+ I++ Sbjct: 88 LNLLTSHGFTGSQISTIIR 106 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,226,318 Number of Sequences: 28952 Number of extensions: 256047 Number of successful extensions: 532 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 519 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 532 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1643603136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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