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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k09r
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido...   182   2e-46
At5g55820.1 68418.m06956 expressed protein                             28   7.5  
At1g61970.1 68414.m06990 mitochondrial transcription termination...    27   9.9  

>At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate
           nucleotidohydrolase family contains Pfam profile:
           PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase
          Length = 166

 Score =  182 bits (444), Expect = 2e-46
 Identities = 92/139 (66%), Positives = 101/139 (72%)
 Frame = -2

Query: 606 PILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVA 427
           P  K  +LSE A  P RGS  +AG DL SA D  VPARGK L+ TDL I +P G Y R+A
Sbjct: 27  PFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPARGKALIPTDLSIAVPEGTYARIA 86

Query: 426 PRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQ 247
           PRSGLA K+ IDVGAGVID DYRG VGV+LFNHSD DF VK GDRIAQLI EKI  P + 
Sbjct: 87  PRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDADFEVKFGDRIAQLIIEKIVTPDVV 146

Query: 246 EVANLSVTQRGDGGFGSTG 190
           EV +L  T RGDGGFGSTG
Sbjct: 147 EVDDLDETVRGDGGFGSTG 165


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = -2

Query: 621 SGKIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGC 442
           S ++QP+   T +  N    +    +++ I+  SA DY   + G      D Q+E+  G 
Sbjct: 719 SKEVQPLGSLTEVGSNQSHGIISRARSSLIEEESANDYKALSDGSNHKSADKQLEVREGN 778

Query: 441 YGRVAPRSGLALKNFIDV 388
                P   + + NF +V
Sbjct: 779 SLLRTPDRPVFVDNFDEV 796


>At1g61970.1 68414.m06990 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 418

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
 Frame = +1

Query: 184 FFSSGAKSTITPLSYRQISNFL*HRIVDL--LTNKLCNSVSFFHTKICVRVIKKNNSNIT 357
           FFSS + + ++P   R+ +NF    +VD   LT KL  S+S    K+      KNN +  
Sbjct: 33  FFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESIS---RKVSFE--DKNNPDSV 87

Query: 358 SIVLINN--TGTNINEILQ 408
             +L ++  TG+ I+ I++
Sbjct: 88  LNLLTSHGFTGSQISTIIR 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,318
Number of Sequences: 28952
Number of extensions: 256047
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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