Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k09f
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    69   5e-13
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   3.4  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   4.4  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   7.7  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   7.7  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.7  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 34/58 (58%), Positives = 40/58 (68%)
 Frame = +3

Query: 393 RLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPRSG 566
           +LSE A  P +GS  +AG DL +A +  VP RGK LV TDL I +P G YGRVAPRSG
Sbjct: 7   KLSEKATIPTKGSANSAGYDLYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRVAPRSG 64


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 163 LIYNNSSIFLSNIAYYRFCFDFKCLH 240
           L+  NS    S++A Y+FC DF  L+
Sbjct: 328 LLILNSHTLASSLAVYQFCLDFTRLN 353


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 141 INNQMCKLLFNFRPKEINRSCYSLRTKTSNI 49
           ++N +CK+L   +P  +    YSL +K+SN+
Sbjct: 45  LSNFLCKIL---KPTNLTPQTYSLESKSSNL 72


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 494 FASSRNSVIICTH*IDPSCFFRASDWL 414
           F SSR+ V+ CT  +     F A DW+
Sbjct: 331 FTSSRHVVLFCTDIVARGLDFPAVDWV 357


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 126 CKLLFNFRPKEINRSCYSLRTKTSN 52
           CKL + F PK++ +    L T+  N
Sbjct: 175 CKLAYEFFPKDLRKRLQKLETEDMN 199


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 375 PILKFTRLSENAFQPVRGSEKAAGIDLMSAY 467
           P +KF RL EN+   + G+  A  + +  AY
Sbjct: 854 PFVKFIRLDENSMFHIYGTGFANDVQIWMAY 884


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,310
Number of Sequences: 5004
Number of extensions: 38059
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)