Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k09f
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296     84   6e-17
08_02_0039 - 11512553-11512822,11512920-11513171,11513784-115139...    28   4.5  

>03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296
          Length = 171

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 41/67 (61%), Positives = 47/67 (70%)
 Frame = +3

Query: 366 KIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYG 545
           K+ P+LK  +LSENA  P RGS  AAG DL SA +  VPARGK +V TDL I +P G Y 
Sbjct: 29  KVAPLLKVKKLSENAVLPSRGSALAAGYDLSSAAEVVVPARGKAMVPTDLSIAIPEGTYA 88

Query: 546 RVAPRSG 566
           RVAPRSG
Sbjct: 89  RVAPRSG 95


>08_02_0039 -
           11512553-11512822,11512920-11513171,11513784-11513951,
           11519429-11519622,11519774-11519795,11519928-11520239,
           11520497-11520826,11520855-11521069,11523106-11523151,
           11523207-11523290
          Length = 630

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 564 QIEVLLYHNTQAVVLFVG--QFSLILC 490
           Q+EVL Y   Q  +LF+G  QFS I+C
Sbjct: 464 QLEVLKYWEAQMSILFLGYKQFSRIIC 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,709
Number of Sequences: 37544
Number of extensions: 198577
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)