Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k09f
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)                   83   1e-16
SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  

>SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)
          Length = 90

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 36/66 (54%), Positives = 48/66 (72%)
 Frame = +3

Query: 366 KIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYG 545
           + + +L F +L++    P RGS  AAG DL SAYD ++PA+GK LVKTD+ + +P GCYG
Sbjct: 20  RAETVLYFKKLTKLGLPPTRGSSHAAGYDLYSAYDVSIPAQGKALVKTDIAVAIPDGCYG 79

Query: 546 RVAPRS 563
           RVAPRS
Sbjct: 80  RVAPRS 85


>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 10  RANSRHKQKLFSINVRCFCPKRITATINFLRTKIEK 117
           RA +     LFS+N   FCP +++   N L   +E+
Sbjct: 186 RAVTAFSNSLFSLNSNAFCPDQVSELENRLEKLVER 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,494
Number of Sequences: 59808
Number of extensions: 260058
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)