Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10k09f
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...    81   5e-16
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...    81   5e-16

>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 40/62 (64%), Positives = 47/62 (75%)
 Frame = +3

Query: 381 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 560
           ++FT+L+ENA  P  GSE+AAG DL SA D TVPA GK  V T +Q+ELP G YGRVAPR
Sbjct: 187 VRFTQLNENAQTPTYGSEEAAGADLYSAEDITVPAHGKCCVSTGIQMELPFGYYGRVAPR 246

Query: 561 SG 566
           SG
Sbjct: 247 SG 248



 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 36/62 (58%), Positives = 44/62 (70%)
 Frame = +3

Query: 381 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 560
           ++ T+ ++NA  P  GS +AAG DL SA D TVPARGK  V T +Q+ LP G YGRVAPR
Sbjct: 350 IQITKSNDNAQMPTYGSAEAAGADLYSAEDVTVPARGKLCVSTGIQMALPIGYYGRVAPR 409

Query: 561 SG 566
           SG
Sbjct: 410 SG 411



 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 36/62 (58%), Positives = 42/62 (67%)
 Frame = +3

Query: 381 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 560
           ++FT +  +A +P  GS  +AG DL SA D  VPA GK  V T LQIELP G YGRVAPR
Sbjct: 31  IRFTEMVGDAQKPTYGSISSAGADLYSAEDVVVPANGKLCVSTGLQIELPIGYYGRVAPR 90

Query: 561 SG 566
           SG
Sbjct: 91  SG 92


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 40/62 (64%), Positives = 47/62 (75%)
 Frame = +3

Query: 381 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 560
           ++FT+L+ENA  P  GSE+AAG DL SA D TVPA GK  V T +Q+ELP G YGRVAPR
Sbjct: 187 VRFTQLNENAQTPTYGSEEAAGADLYSAEDITVPAHGKCCVSTGIQMELPFGYYGRVAPR 246

Query: 561 SG 566
           SG
Sbjct: 247 SG 248



 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 36/62 (58%), Positives = 44/62 (70%)
 Frame = +3

Query: 381 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 560
           ++ T+ ++NA  P  GS +AAG DL SA D TVPARGK  V T +Q+ LP G YGRVAPR
Sbjct: 350 IQITKSNDNAQMPTYGSAEAAGADLYSAEDVTVPARGKLCVSTGIQMALPIGYYGRVAPR 409

Query: 561 SG 566
           SG
Sbjct: 410 SG 411



 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 36/62 (58%), Positives = 42/62 (67%)
 Frame = +3

Query: 381 LKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPR 560
           ++FT +  +A +P  GS  +AG DL SA D  VPA GK  V T LQIELP G YGRVAPR
Sbjct: 31  IRFTEMVGDAQKPTYGSISSAGADLYSAEDVVVPANGKLCVSTGLQIELPIGYYGRVAPR 90

Query: 561 SG 566
           SG
Sbjct: 91  SG 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,778
Number of Sequences: 27780
Number of extensions: 208004
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)